View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5472-Insertion-8 (Length: 358)
Name: NF5472-Insertion-8
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472-Insertion-8 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 34219471 - 34219119
Alignment:
| Q |
7 |
acaaatcagtagtttttacgatctgcatgacaacacttttaagtgggttaaagccttagacttacatatccaagaagatcaaggccatgatagtcacaat |
106 |
Q |
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| T |
34219471 |
acaaatcagtagttcttacgatctgcatgacaacccttttaagtgggttaaagccttagacttacatatccaagaagatcaaggccatgatagtcacaat |
34219372 |
T |
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| Q |
107 |
attccctgttcttgtttccactaattatctctagtataatagcaccaaaactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctgg |
206 |
Q |
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| T |
34219371 |
attccctgttcttgtttccactaattatctctagtataatagcaccaaaactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctgg |
34219272 |
T |
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| Q |
207 |
agatatgtaaccactg-nnnnnnnnnnnnnnnnnnnnngacggaacagatacggggcttaggaaaagagtagtgaatatttctaatttatgaagcaacaa |
305 |
Q |
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| T |
34219271 |
agatatgtaaccactgaaacaaataataaagaaaaaaagacggaacagatacggggcttaggaaaagagtagtgaatatttataatttatgaagcaacaa |
34219172 |
T |
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| Q |
306 |
attaaagtcattgaagtatgcttactaagttcctactactcttcttgttaccc |
358 |
Q |
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| T |
34219171 |
attaaagtcattgaagtatgcttactaagttcctactactcttcttgttaccc |
34219119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 34192233 - 34192400
Alignment:
| Q |
55 |
taaagccttagacttacatatccaagaagatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataatagcaccaa |
154 |
Q |
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| T |
34192233 |
taaatccttagacttacatatccaagaagatcaagatcatcatagtcacaatattcccggttcttgtttccactaattgtctctagtataataacgccaa |
34192332 |
T |
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| Q |
155 |
aactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
222 |
Q |
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| T |
34192333 |
aactaaagacatcagatttcaccgagaaaaatccacgtgtcgcgaattctggagacatgtaaccactg |
34192400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 34208256 - 34208100
Alignment:
| Q |
66 |
acttacatatccaagaagatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataatagcaccaaaactaaagaca |
165 |
Q |
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| T |
34208256 |
acttacatatccaagaaggtcaagatcatgatggtcactatattccctgttcttttttccagttattgtctctagtataataacaccgaaactaaagaca |
34208157 |
T |
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| Q |
166 |
tcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
222 |
Q |
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| T |
34208156 |
tctgatttcacggagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
34208100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 34192445 - 34192528
Alignment:
| Q |
275 |
tagtgaatatttctaatttatgaagcaacaaattaaagtcat----tgaagtatgcttactaagttcctactactcttcttgtt |
354 |
Q |
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| T |
34192445 |
tagtgaatatttatagtttataaagaaacaaattaaagtcatcaatttaagcatacttactaagttcctactattcttcttgtt |
34192528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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