View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5472_high_11 (Length: 284)
Name: NF5472_high_11
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 37276759 - 37276490
Alignment:
| Q |
1 |
aatgattgataatatacataaacttataatagttcaaagggattccgaagtgtgagggaagatcgttggtatcaatcattcttacacctctaattttgac |
100 |
Q |
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| T |
37276759 |
aatgattgataatatacataaaattataatagttcaaagggattccgaagtgtgaggaaag-tcgttggtatcaaacattcttacacctctaattttgat |
37276661 |
T |
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| Q |
101 |
tatttatagttgnnnnnnnnnnngttggtagaaatagttatggttagttatagtgagaaatttgctcaaaataaaatttgggtcttcatgatattatcta |
200 |
Q |
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| T |
37276660 |
tatttatagttgttttttttt---ttggtagaaatagttatggttagttatagtgagaaatttgctcaaaataaaatttgggtcttcatgttattatcta |
37276564 |
T |
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| Q |
201 |
aatttctttgattcatttatttaagatccatacccaacttaattcatctttctacttaaatttagcgacctatg |
274 |
Q |
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| T |
37276563 |
aatttctttgatttatttatttaagatccatacccaacttaattcatctttctacttaaatttagcgacctatg |
37276490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 37280429 - 37280382
Alignment:
| Q |
129 |
tagaaatagttatggttagttatagtgagaaatttgctcaaaataaaa |
176 |
Q |
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| T |
37280429 |
tagaaatgcttatggttagttatagtcagaaatttgctcaaaataaaa |
37280382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 37280571 - 37280474
Alignment:
| Q |
9 |
ataatatacataaacttataatagttcaaagggattccgaagtgtgagggaagatcgttggtatcaatcattcttacacctctaattttgactatttat |
107 |
Q |
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|||||||||||||| |||| | |||||||||| ||||| || ||||| || ||| |||||||||| || ||||||||||| ||||| ||||||||| |
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| T |
37280571 |
ataatatacataaaattattacagttcaaaggtattccaaaacatgaggaaa-atcattggtatcaaacactcttacacctcacattttaactatttat |
37280474 |
T |
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