View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5472_high_4 (Length: 402)
Name: NF5472_high_4
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 30503823 - 30503716
Alignment:
| Q |
285 |
cacaattatggctatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatc |
384 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503823 |
cacaattatggttatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatc |
30503724 |
T |
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| Q |
385 |
tctctctg |
392 |
Q |
| |
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|||||||| |
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| T |
30503723 |
tctctctg |
30503716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 30504060 - 30503931
Alignment:
| Q |
45 |
aagtctgagatatgatttctgacagctattaattgcataaacaatctttccctcgtttcttgggaaactaaaaatagatgaggtagaaagagacacatag |
144 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
30504060 |
aagtctgagatttgatttctgacagctattaattgcataaacaatctttatc-cttttcttgggaaactaataatagatgatgtagaaagagacacatag |
30503962 |
T |
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| Q |
145 |
aattcacctaaacaagaaagaaacactgaga |
175 |
Q |
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|||||||| ||||||||||||||||| |||| |
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| T |
30503961 |
aattcaccaaaacaagaaagaaacacagaga |
30503931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 30489114 - 30489007
Alignment:
| Q |
285 |
cacaattatggctatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatc |
384 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||| |
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| T |
30489114 |
cacaattatggttatcaggaccattgatatcagttacactcttaaattatggtatcaatattatttcacttatgtttgttggtcatcttggtgagttatc |
30489015 |
T |
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| Q |
385 |
tctctctg |
392 |
Q |
| |
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|||||||| |
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| T |
30489014 |
tctctctg |
30489007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 290 - 392
Target Start/End: Complemental strand, 30514492 - 30514390
Alignment:
| Q |
290 |
ttatggctatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatctctct |
389 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
30514492 |
ttatggctatcagggccattgatatcagttacacttttaaattttggtatcaatcttatttcagttatgtttgttggtcatcttggtgagttacctctct |
30514393 |
T |
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| Q |
390 |
ctg |
392 |
Q |
| |
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||| |
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| T |
30514392 |
ctg |
30514390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 290 - 392
Target Start/End: Original strand, 24706351 - 24706453
Alignment:
| Q |
290 |
ttatggctatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatctctct |
389 |
Q |
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|||||||||||||| ||||||||||||||| || | |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
24706351 |
ttatggctatcagggccattgatatcagttgcatttttaaattttggtatcaatcttatttcagttatgtttgttggtcatcttggtgagttacctctct |
24706450 |
T |
|
| Q |
390 |
ctg |
392 |
Q |
| |
|
||| |
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|
| T |
24706451 |
ctg |
24706453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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