View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5472_low_1 (Length: 690)
Name: NF5472_low_1
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 19 - 682
Target Start/End: Complemental strand, 4775700 - 4775040
Alignment:
| Q |
19 |
ctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775700 |
ctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttcc |
4775601 |
T |
|
| Q |
119 |
ttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaa |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775600 |
ttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaa |
4775501 |
T |
|
| Q |
219 |
taatatctgtaaatggaaatcatatcccatagtaaatagccaattagtatggttgactgttccatgattttagcataattcatcattgtattatatgtat |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775500 |
taatatctgtaaatggaaatcatatcccatagtata---------------gttgactgttccatgattttagcataattcatcattgtattatatgtat |
4775416 |
T |
|
| Q |
319 |
atatagccacacaaatgttaacatt---ttctattgacttgaatataacagaacgtat---------acattgcaggtggctacagaggatagatggatt |
406 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
4775415 |
atatggccacacaaatgttaacattattttctattgacttgaatataacagaacgtatttatcctatacatcgcaggtggctacagaggatagatggatt |
4775316 |
T |
|
| Q |
407 |
tggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcatgttctttggcttaaag |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775315 |
tggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcatgttctttggcttaaag |
4775216 |
T |
|
| Q |
507 |
tagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggagggtcttggtgctgtttgt |
606 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| |
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| T |
4775215 |
tagtacttctcaaagtctcaatttttgctttacgtttgagtttgaatcatgttcctgctagagacaatttatttaaaaggagggtcttagtgctgtttgt |
4775116 |
T |
|
| Q |
607 |
ttttctgtttttgtagtgaacttgaccagttgcatgtttctgtaatcttgatgggttggtttcgtacacctatgct |
682 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4775115 |
ttttctgtttttgtagtgaacttgaccagttgcatgtttctctaatcttgatgggttggtttcgtacacctatgct |
4775040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 594
Target Start/End: Complemental strand, 29553195 - 29552984
Alignment:
| Q |
392 |
gaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcat- |
490 |
Q |
| |
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||||||||||||||||||||||||| | | ||||| ||||||| ||||| |||||| | ||||||| | | ||| || |||||||| |||||||| |
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| T |
29553195 |
gaggatagatggatttggcatttacactcttctcagagttacacagttagcaatgcgtataataaattgatggagggtttgcagaactccactcctcaga |
29553096 |
T |
|
| Q |
491 |
--------gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataa |
582 |
Q |
| |
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||||||||||||||| | || | |||||||||||| ||||||||||| |||||| || |||||| | ||||| || | ||||||||| ||| |
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| T |
29553095 |
attctcaggttctttggcttaaaatggttcctctcaaagtctctatttttgcttggcgattgggtctgaatcgtattcctactaaaaacaatttatttaa |
29552996 |
T |
|
| Q |
583 |
aaggagggtctt |
594 |
Q |
| |
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|||||||||||| |
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| T |
29552995 |
aaggagggtctt |
29552984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 4e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 43061049 - 43060836
Alignment:
| Q |
28 |
gccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagaca |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43061049 |
gccaagaagcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctcacaaagccgttatcctcggtacgacatcacttccttaaagaca |
43060950 |
T |
|
| Q |
128 |
agattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctg |
227 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||| | |
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| T |
43060949 |
agattggagttattgatgatacctccatcttgagcgggcgtgtaggagtattaacttaagcatttaccaaatcaaataacaatggttgtaatgatatcag |
43060850 |
T |
|
| Q |
228 |
taaatggaaatcat |
241 |
Q |
| |
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|||||||||||||| |
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| T |
43060849 |
taaatggaaatcat |
43060836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 491 - 591
Target Start/End: Original strand, 17173614 - 17173714
Alignment:
| Q |
491 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
590 |
Q |
| |
|
||||||||||||||||| || | ||||||||| ||||| |||||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
17173614 |
gttctttggcttaaagtggttcatctcaaagtatcaatatttgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
17173713 |
T |
|
| Q |
591 |
t |
591 |
Q |
| |
|
| |
|
|
| T |
17173714 |
t |
17173714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 43060807 - 43060749
Alignment:
| Q |
310 |
tatatgtatatatagccacacaaatgttaacattttctattgacttgaatataacagaa |
368 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
43060807 |
tatatatatatattaccacacaaatgttaatattttctattgacttgaatacaacagaa |
43060749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 168 - 336
Target Start/End: Complemental strand, 448677 - 448506
Alignment:
| Q |
168 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaatta |
264 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||| ||||||| |||||||||| |
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|
| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatcatatcttatagtaactagccaatta |
448578 |
T |
|
| Q |
265 |
gtatggttgactgttccatgattttagcataattcatcattgtattatatgtatatatagccacacaaatgt |
336 |
Q |
| |
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|||| ||||||||||||||||||| |||| ||||||||||||||| |||||||||| || |||||||||| |
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| T |
448577 |
gtatagttgactgttccatgatttgagcaatattcatcattgtattccatgtatatatggctacacaaatgt |
448506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 591
Target Start/End: Original strand, 38397707 - 38397807
Alignment:
| Q |
491 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
590 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||| ||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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|
| T |
38397707 |
gttctttggcttaaagtggtttctctcaaagtatcaattttcgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
38397806 |
T |
|
| Q |
591 |
t |
591 |
Q |
| |
|
| |
|
|
| T |
38397807 |
t |
38397807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 42019520 - 42019449
Alignment:
| Q |
115 |
ttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaa |
186 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||| | || |||||| || ||||||||| |||||| |
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|
| T |
42019520 |
ttccttaaagacaagattggagttcttgaagataactccattttcagggggagtaaaggagtatttacttaa |
42019449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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