View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5472_low_16 (Length: 255)
Name: NF5472_low_16
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34865170 - 34864929
Alignment:
| Q |
1 |
tttcgctccatgaatccattcatcgttaatagatataagtacctatttatccatctccttagtttcgaatggttagaccctccctaattaattgtagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34865170 |
tttcgctccatgaatccattcatcgttaatagatataagtacctatttatccatctccttagtttcgaatggttagaccctccctaattaattgtagtct |
34865071 |
T |
|
| Q |
101 |
gccgcttcacctattgggaaaactgacaataagattagtaaagagaaatatgggagtggtggatct-----ccctcaaaatgcaaacataatgagatttg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34865070 |
gccgcttcacctattgggaaaactgacaataagattagtaaagagaaatatgggagtggtggatcggatccccctcaaaatgcaaacataatgagatttg |
34864971 |
T |
|
| Q |
196 |
agactagagattcatccatatattgctccttgatgtttcatt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34864970 |
agactagagattcatccatatattgctccttgatgtttcatt |
34864929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University