View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5472_low_2 (Length: 547)
Name: NF5472_low_2
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 45340597 - 45341129
Alignment:
| Q |
1 |
cagtccccacatgtttccaatctaatccaatctatcatcnnnnnnn-ttgtaataagcacaatattcatgttctcatcgtcacctttcatctatagatcc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45340597 |
cagtccccacatgtttccaatctaatccaatctatcatcaaaaaaaattgtaataagcacaatattcatgttctcatcgtcacctttcatctatagatcc |
45340696 |
T |
|
| Q |
100 |
attcatcacgtgtcacatgaaagtgatcatacctataatatgtgatgtgtatatacacaagtccaaaagaatcactacnnnnnnncactcttcaaacgca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45340697 |
attcatcacgtgtcacatgaaagtgatcatacctataatatgtgatgtgtatatacacaagtccaaaagaatcactaccaaaaaacactcttcaaacgca |
45340796 |
T |
|
| Q |
200 |
tactacagatgaaactgagagtggatagagataggtattagcatactggaaagaaacagtgccaccattgactaatggtctaccatcattgacaaggcag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45340797 |
tactacagatgaaactgagagtggatagagataggtattagcatactggaaagaaacagtgccaccattgactaatggtctaccatcattgacaaggcag |
45340896 |
T |
|
| Q |
300 |
tcattgtaacggaggcgtttgaagagcttagggttgatgagacgtgctgagctgaaccagccacatcgaagatgaatagcagaaatgtcacatccactta |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45340897 |
tcattgtaacggaggcgtttgaagagcttagggttgatgagacgtgctgagctgaaccagccacatcgaagatgaatagcagaaatgtcacatccactta |
45340996 |
T |
|
| Q |
400 |
cacacatgttcatgatttcaactgtgtatgttggtataccacttgggagtggtgctgttgagccttgattgataacaatatcagatttgctgcatttttt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45340997 |
cacacatgttcatgatttcaactgtgtatgttggtataccacttgggagtggtgctgttgagccttgattgataacaatatcagatttgctgcatttttt |
45341096 |
T |
|
| Q |
500 |
gtcaccccatattcggtttggttccaacctctc |
532 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
45341097 |
gtccccccatattcggtttggttccaacctctc |
45341129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University