View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5472_low_4 (Length: 450)
Name: NF5472_low_4
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 276 - 441
Target Start/End: Original strand, 52551793 - 52551958
Alignment:
| Q |
276 |
ccctttcaaattctcttttgtaactaatttctttgcaggaatatctattatgccaagtgttactgtttaacattcatgtcttctgttctctgtgaaatcc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52551793 |
ccctttcaaattctcttttgtaactaatttctttgcaggaatctctattatgccaagtgttactgtttaacattcatgtcttctgttctctgtgaaatcc |
52551892 |
T |
|
| Q |
376 |
ttctttcttggtttataattaattcatctttcagacgtagaacccacttagttcaatctttctctg |
441 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52551893 |
ttctttcttggtttatcattaattcatctttcagacgtagaacccacttagttcaatctttctctg |
52551958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 52551627 - 52551671
Alignment:
| Q |
104 |
caccatcattctcttctatatattcactcctagttactcaaccaa |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52551627 |
caccatcattctcttctatatattcactcctagttactcaaccaa |
52551671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 52551536 - 52551567
Alignment:
| Q |
14 |
ctaataaacctaggaggaggagattccgatga |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
52551536 |
ctaataaacctaggaggaggagattccgatga |
52551567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 408 - 440
Target Start/End: Original strand, 7235106 - 7235138
Alignment:
| Q |
408 |
agacgtagaacccacttagttcaatctttctct |
440 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
7235106 |
agacgtaggacccacttagttcaatctttctct |
7235138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University