View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5473-Insertion-1 (Length: 521)
Name: NF5473-Insertion-1
Description: NF5473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5473-Insertion-1 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 134 - 521
Target Start/End: Original strand, 6085282 - 6085675
Alignment:
| Q |
134 |
tgcaatcagaaatggcgacaattaatagttccgattgcggcaaagtagagaaggttcaaattcgtca------ttgattgttttctattcttgacgcgtc |
227 |
Q |
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| T |
6085282 |
tgcaatcagaagtggcaacaattaatagttcataatgcagcaaagtagagaaggttcaaattcggcaacaactttgattgttttctattcttgacgcgtc |
6085381 |
T |
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| Q |
228 |
ttgtgctataatcatagttgtatcatttttgtaataattatttatatatgtatcatacagaaaatctggggaccataccctagtttattcttcaaattac |
327 |
Q |
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| T |
6085382 |
ttgtgctataatcatatttgtatcatttttgtaataattatttatatatgtatcataaagaaaatctggggacaataccctagtttattcttcaaattac |
6085481 |
T |
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| Q |
328 |
atcactagctttatacccaaattccatgtcaacaatattcagttgatgaatcaaccaattgttggagtcctaataaccttattagattcatcaacataca |
427 |
Q |
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| T |
6085482 |
atcactagctttatacccaaatcttatgtgaacaatatttagttgatgaatcaaccaattattggagtcctaatgaccttattagattcatcaacataca |
6085581 |
T |
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| Q |
428 |
atcgaactctcttggacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatatatcttcctttatttttct |
521 |
Q |
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| T |
6085582 |
atcgaactctcttgaacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatatatcttcctttatttttct |
6085675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 6085125 - 6085252
Alignment:
| Q |
8 |
aatagaaaaacgtgggttggtaattgattcgtcacttctgggtgtcactataattagtagtttccttcttttccaaaaagaagatggtgtatccgcaaac |
107 |
Q |
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| T |
6085125 |
aatagaaaaacgtgggttggtaattgattcgttagttctaggtgttactatgattcgtagtttccttcttttccaaaaaggagatggtgtactcgcaaac |
6085224 |
T |
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| Q |
108 |
actctaacgatctagtaagaatattttg |
135 |
Q |
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| T |
6085225 |
actctgacgatctagtaagaatattttg |
6085252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 311 - 518
Target Start/End: Original strand, 6070389 - 6070596
Alignment:
| Q |
311 |
tttattcttcaaattacatcactagctttatacccaaattccatgtcaacaatattcagttgatgaatcaaccaattgttggagtcctaataaccttatt |
410 |
Q |
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| T |
6070389 |
tttattctttaaatttcaccactagcattataccgaaatctcatttgaacaatatttagttgatgaatcaaccaattgttggagtcttaatgagcttatt |
6070488 |
T |
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| Q |
411 |
agattcatcaacatacaatcgaactctcttggacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatatatcttcc |
510 |
Q |
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| T |
6070489 |
agattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcc |
6070588 |
T |
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| Q |
511 |
tttatttt |
518 |
Q |
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| T |
6070589 |
tttatttt |
6070596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 311 - 451
Target Start/End: Complemental strand, 6056015 - 6055874
Alignment:
| Q |
311 |
tttattcttcaaattacatcactagctttatacccaaattccatgtcaacaa-tattcagttgatgaatcaaccaattgttggagtcctaataaccttat |
409 |
Q |
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| T |
6056015 |
tttattctttaaatttcaccactagcattatacccaaatctcatttgaacaaatatttagttgatgaatcaaccaattgttggagtcttaatgagcttat |
6055916 |
T |
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| Q |
410 |
tagattcatcaacatacaatcgaactctcttggacctgaaat |
451 |
Q |
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| T |
6055915 |
tagattgatcaacatacaatcgaactctcttgaacctgaaat |
6055874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 406 - 521
Target Start/End: Complemental strand, 6035657 - 6035542
Alignment:
| Q |
406 |
ttattagattcatcaacatacaatcgaactctcttggacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatatat |
505 |
Q |
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|||||| ||||||||||||||||||||||||| | | |||| |||||| |||||| ||||| |||||| |||||||| |||| ||| |||| || | |
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| T |
6035657 |
ttattaaattcatcaacatacaatcgaactctatcgtacctcaaatcaaaggtaacacatgaaccaggggacaccacttctattttaacctcagacatct |
6035558 |
T |
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| Q |
506 |
cttcctttatttttct |
521 |
Q |
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| T |
6035557 |
cttcctttatttttct |
6035542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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