View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5473_high_2 (Length: 237)
Name: NF5473_high_2
Description: NF5473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5473_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 29613333 - 29613138
Alignment:
| Q |
18 |
tctctatgataatggagagagaaaatggagaagatcctaattcttcgagcaaagctatatggtttccaattttatattaattatttctttctcctcggaa |
117 |
Q |
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| T |
29613333 |
tctctatgataatggagagagaaaatggagaagatcctaattcttcgagcaaagctatatggtttccaattttatattaattatttctttctcctc-gaa |
29613235 |
T |
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| Q |
118 |
ttcgaacacaaaaatgtgtattttaccctgttaaattatgtccaaataccagtcttgctatttccattgtccatatatatatggattaaacaatccc |
214 |
Q |
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| T |
29613234 |
ttcgaacacaaaaatgtgtattttaccctgttaaattatgcccaaataccagtcttgttatttccattgtccatatatatatggattaaacaatccc |
29613138 |
T |
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