View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5473_low_1 (Length: 270)
Name: NF5473_low_1
Description: NF5473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5473_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 7832270 - 7832049
Alignment:
| Q |
41 |
gcatccaatccacataataagacttttcttgctcaaacccatcttattctgtttttgatttgtgctgtgaatttgacctcccaactcacgctgtttctga |
140 |
Q |
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| T |
7832270 |
gcatccaatccacataataagacttttcttgctcaaactcatcttattctgtttttgatttgtgctgtgaatttgacctcccaactcacgctgtttctga |
7832171 |
T |
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| Q |
141 |
ttctgagcattgtgctccattctaatattaccacacttagcatcaacctccaccctcagcttcccataagttgtccttttgaaattacatcccaaccttc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7832170 |
ttctgagcattgtgctccattctaatattaccacacttagcatcaacctccaccctcagcttcccataagttgtccttttgaaattacatcccaaccttc |
7832071 |
T |
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| Q |
241 |
ccaatctttcctgtcctttgat |
262 |
Q |
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|||||||||||||||||||||| |
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| T |
7832070 |
ccaatctttcctgtcctttgat |
7832049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 7829740 - 7829768
Alignment:
| Q |
17 |
atgtccaaccttgtatgtttaagtgcatc |
45 |
Q |
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| T |
7829740 |
atgtccaaccttgtatgtttaagtgcatc |
7829768 |
T |
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