View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5473_low_3 (Length: 231)
Name: NF5473_low_3
Description: NF5473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5473_low_3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 3685454 - 3685236
Alignment:
| Q |
13 |
tcatcaaccatataatcattaatgttaacaagaaatataacagatctatcacagtgcggtagtcgaactccatgacgacgctacaacctaatcttgttgt |
112 |
Q |
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| T |
3685454 |
tcatcaaccatataatcattaatgtcaacaagaaatataacagatccatcacagtgcggtagtcaaactccatgacgacgctacaacctaatcttgttgc |
3685355 |
T |
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| Q |
113 |
tagaaataaagcattaagctcttgaaacttgagagataaacctaaaaatatcaaattgttcttcatgttagcacaatatgaagcaaaaagttaaaataca |
212 |
Q |
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| T |
3685354 |
tagaaataaagcattaagctcttgaaacttgagagataaacctaaaaatatcaaattgttcttcatgttagcataatatgaagcaaaaagttaaaatact |
3685255 |
T |
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| Q |
213 |
tcgatctataaaaatgttt |
231 |
Q |
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| T |
3685254 |
taaatctataaaaatgttt |
3685236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 3661877 - 3661814
Alignment:
| Q |
100 |
ctaatcttgttgttagaaataaagcattaagctcttgaaacttgagagataaacctaaaaatat |
163 |
Q |
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| T |
3661877 |
ctaatcttgttgctagaaataaagctgtaagctcttggctcttgagggatatacctaaaaatat |
3661814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 3667967 - 3667900
Alignment:
| Q |
100 |
ctaatcttgttgttagaaataaagcattaagctcttgaaacttgagagataaacctaaaaatatcaaa |
167 |
Q |
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| T |
3667967 |
ctaatcttgttgctagaaataaagctgtgagctcttgggtcttgagggataaacctataaatatcaaa |
3667900 |
T |
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