View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_high_10 (Length: 485)
Name: NF5474_high_10
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 466
Target Start/End: Complemental strand, 31528478 - 31528026
Alignment:
| Q |
12 |
acagaccttaaatacccaaattgcaataaaaacaaatgtacatctgagacaattactactagaaagcttactttttattggttcagtattaagccaagga |
111 |
Q |
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| T |
31528478 |
acagaccttaaatacccaaattgcaataaaaacaaatgtacatctgagacaattactactacaaagcttactttttattggtttagtattaagccaagga |
31528379 |
T |
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| Q |
112 |
taagaaatatccaagtggtgaaaagggcttgggctaataacaataacaagtatgattatgaaggttgaaagagtacactgaaattaattggtgatacata |
211 |
Q |
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| T |
31528378 |
taagaaatatccaagtgatgaaaagggcttgggctaataacaa------gtatgattatgaaggttgaaagagtacactgaaattaattggtgatacata |
31528285 |
T |
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| Q |
212 |
tggattttcaccattacaaagactatgagcagctagagtacaagcaaactctgagggatgatattgatcccaaaacaagaaatggcttcgattttcacac |
311 |
Q |
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| T |
31528284 |
tggattttcaccattacaaagactatgagcagctagagtacaagcaaactctgagggatgatattgatcccaaaacaagaaatggcttcgattttcacac |
31528185 |
T |
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| Q |
312 |
actttggcattagggctgcagggtactccatctttgagtgtttgatttccacaacatgctgattttacatctagtatggcttcattaatcaaagcaagaa |
411 |
Q |
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|||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31528184 |
actttggcatcagggctacatggtactccatctttgagtgtttgatttccacaacatgctgattttacatctagtatggcttcattaatcaaagcaagaa |
31528085 |
T |
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| Q |
412 |
aaacaagatt----atttgctaattttcatcaatttgtgtttggtaaaagtaacactat |
466 |
Q |
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| T |
31528084 |
aaacaagattatttatttgctaattttcatcaatttgtgtttggtaaaagtaaaactat |
31528026 |
T |
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