View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_high_15 (Length: 396)
Name: NF5474_high_15
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 384
Target Start/End: Complemental strand, 33441245 - 33440858
Alignment:
| Q |
2 |
aacccggtctaattttcgcaacaggaaattttgatatatattcttgattttatannnnnnnnn----agctctgatggtagagtatgaaagagaaagatg |
97 |
Q |
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| T |
33441245 |
aacccggtctaatttttgcaacgggaaattttgacatatattcttgatttttttttatttttttttcagctctgatggtagagtatgaaagagaaagata |
33441146 |
T |
|
| Q |
98 |
tatctatttcaattaatgtgaagattgttggtgttattgaaataaaatatcttataacaagtctcacattgcttatgatggtaaaagaagatgaagatca |
197 |
Q |
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| T |
33441145 |
tatctatttcaattaatgtgaagattgttggtgttattgaaataaaatatcttataacaagtctcacattgcttatgatggtaaaggaagatgaagatca |
33441046 |
T |
|
| Q |
198 |
agactatatatattgactcaagttcttcgtcacaagatccatcaatt-gagccaatataggtttgtgtctaaattttttctttcttttatatgtactctt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441045 |
agactatatatattgactcaagttcttcgtcacaagatccatcaattagagtcaatataggtttgtgtctaaattttttctttcttttatatgtactctt |
33440946 |
T |
|
| Q |
297 |
atattaagtaggacgaatattaacttttgaagagtgtggctttactggaatcgtggggtgattgagaaaaatctatgtgttgtcatat |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
33440945 |
atattaagtaggacgaatattaacttttgaagagtgtggctttactggaatcgtggggtgactgagaaaaatctatgtgttgtaatat |
33440858 |
T |
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