View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_high_2 (Length: 853)
Name: NF5474_high_2
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 115 - 493
Target Start/End: Original strand, 38946746 - 38947124
Alignment:
| Q |
115 |
ttaaagtaaataaatacatacaaatgatgttttgtaaattgaatgagtatnnnnnnntttacttcgaaagtgcatcaatatcaatattcattatttgtca |
214 |
Q |
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| T |
38946746 |
ttaaagtaaataaatacatacaaatgatgttttgtaaattgaatgagtataaaaaaatttactttgaaagtgcatcaatatcaatattcattatttgtca |
38946845 |
T |
|
| Q |
215 |
aaagatctctagaaaagattatttgtcaaaagnnnnnnnnnncttcctctatttattagtaaaagaatctattaaaatttccctttttccatttttacat |
314 |
Q |
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| T |
38946846 |
aaagatctctaaaaaagattatttgtcaaaagaaaaaaaaaacttcctctatttattagtaaaagaatctattaaaatttccctttttccatttttacat |
38946945 |
T |
|
| Q |
315 |
aatctccttaactgcaatgtctaatctttttaagcaatctctaataaatattgtcaatcaaggaacatagactaattttctttttaaaaaagtgaactta |
414 |
Q |
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| T |
38946946 |
aatctccttaactgcaatgtctaat-tttttaagcaatctctaataaatattgtcaatcaaggaacatagactaattttctttttaaaaaagtgaactta |
38947044 |
T |
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| Q |
415 |
taaaacaatatcat-annnnnnnnnnaaggaaacaaattaaatattattatcataattttgttaattcatgtaatctagt |
493 |
Q |
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| T |
38947045 |
taaaacaatatcataatttttttttgaaggaaacaaattaaaaattattatcataatttttttaattcatgtaatctagt |
38947124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 516 - 853
Target Start/End: Original strand, 38947227 - 38947561
Alignment:
| Q |
516 |
gtgacttaagtaagtgtcctttacacaaaaataaaa-taacaactttaaatttggtacacttaattaacactttatatatcacttttatcacaccattct |
614 |
Q |
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| T |
38947227 |
gtgacttaagtaagtgtcctttacacaaaaataaaaataacaactttaaatttggtacactcaattaacactttgtatatcacttttatcacaccattct |
38947326 |
T |
|
| Q |
615 |
ttcttatacgttctttctcgtgatgtcgtcaaggtgttttatcgtccaccaaacattttcctaaaataataaaataaaggttttaccatccccggtaaaa |
714 |
Q |
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|||| |||| ||||||| || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38947327 |
ttctgatac----tttctcgcgacgtcgtcaaggtgttttatcgttcacctaacattttcctaaaataataaaataaaggttttaccatcccctataaaa |
38947422 |
T |
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| Q |
715 |
cccctttatattctcttcacaatttacattctctctatccacaaaaccaacaagtagaaaaccaagccctgtctcgtcgtcacagacgcacaccttctca |
814 |
Q |
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| T |
38947423 |
cccctttatattctcttcacaatttgcattctctctatccacaaaacaaacaagtagaaaaccaagccatgtctcgtcgtcatagacgcacaccttctca |
38947522 |
T |
|
| Q |
815 |
agccagtccttctgagatatttgctgctgatatcttcac |
853 |
Q |
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| T |
38947523 |
agccattccatctgagatatttgctgctgatatcttcac |
38947561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 808 - 853
Target Start/End: Original strand, 38941597 - 38941642
Alignment:
| Q |
808 |
cttctcaagccagtccttctgagatatttgctgctgatatcttcac |
853 |
Q |
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| T |
38941597 |
cttctcaagccattccatctgagatatttgctgctgatatcttcac |
38941642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38946689 - 38946745
Alignment:
| Q |
1 |
tctataccactccatttcatttcaatccatcatattccatcgattcaaacataacct |
57 |
Q |
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| T |
38946689 |
tctataccattccatttcattccaatccatcatattccattcatccaaacataacct |
38946745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 15004205 - 15004164
Alignment:
| Q |
12 |
ccatttcatttcaatccatcatattccatcgattcaaacata |
53 |
Q |
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| T |
15004205 |
ccatttcattccactccatcatattccatcaattcaaacata |
15004164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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