View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5474_high_28 (Length: 252)

Name: NF5474_high_28
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5474_high_28
NF5474_high_28
[»] chr5 (3 HSPs)
chr5 (10-252)||(7857845-7858087)
chr5 (10-252)||(6901457-6901700)
chr5 (163-252)||(6828054-6828143)
[»] chr7 (6 HSPs)
chr7 (10-252)||(31495060-31495305)
chr7 (125-246)||(32631396-32631517)
chr7 (163-249)||(39300531-39300617)
chr7 (167-252)||(48545142-48545227)
chr7 (154-246)||(36354747-36354839)
chr7 (67-111)||(39300669-39300713)
[»] chr1 (7 HSPs)
chr1 (67-252)||(9174687-9174872)
chr1 (67-252)||(9832527-9832702)
chr1 (83-246)||(49459278-49459442)
chr1 (163-252)||(10897537-10897626)
chr1 (163-252)||(33242562-33242651)
chr1 (163-252)||(36402980-36403069)
chr1 (10-42)||(9191975-9192007)
[»] chr8 (3 HSPs)
chr8 (104-248)||(24295830-24295974)
chr8 (163-252)||(37566622-37566711)
chr8 (163-252)||(30381923-30382012)
[»] chr2 (8 HSPs)
chr2 (163-252)||(11535570-11535659)
chr2 (163-252)||(24192764-24192853)
chr2 (121-246)||(24935387-24935512)
chr2 (125-246)||(25684080-25684201)
chr2 (154-231)||(30046483-30046560)
chr2 (154-231)||(30137527-30137604)
chr2 (83-212)||(38821659-38821788)
chr2 (95-252)||(38534645-38534799)
[»] chr4 (4 HSPs)
chr4 (164-252)||(54510457-54510545)
chr4 (126-249)||(40144469-40144590)
chr4 (182-252)||(47686736-47686806)
chr4 (163-248)||(5117712-5117796)
[»] chr3 (7 HSPs)
chr3 (85-252)||(33118064-33118228)
chr3 (163-246)||(39337519-39337602)
chr3 (83-212)||(24573743-24573872)
chr3 (83-252)||(6783290-6783454)
chr3 (163-252)||(27593842-27593931)
chr3 (159-208)||(48377792-48377841)
chr3 (163-233)||(43151945-43152014)
[»] chr6 (2 HSPs)
chr6 (125-246)||(35165509-35165630)
chr6 (163-252)||(10643263-10643352)
[»] scaffold0057 (1 HSPs)
scaffold0057 (83-136)||(17283-17336)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 7857845 - 7858087
Alignment:
Q  10 aatattacttaagaagacatgaaactagaaccactttgttattgnnnnnnnnnnnnntgtatcgatttatttctttatcatgcaaacctttgagttttta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||    
T  7857845 aatattacttaagaagacatgaaactagaaccactttgttattgaaaaatttaaaaatgtatcgatttatttctttatcatgcaaacctttgagttttta 7857944  T
Q  110 ttatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatctta 209  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |||||||| |||    
T  7857945 ttatctttagtcattcagtcttgtaattttgtatttttgtggtcatttgatagagtcaattcaaatcttccgaattctcataaaatactttcaaatttta 7858044  T
Q  210 aaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7858045 aaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 7858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 6901700 - 6901457
Alignment:
Q  10 aatattacttaagaagacatgaaactagaaccactttgttattgnnnnnnnnnnnnnt-gtatcgatttatttctttatcatgcaaacctttgagttttt 108  Q
    |||||||||||||||||||| |||||||||||||||||||||||             | ||||||||||  || |||||||||||||||||||| |||||    
T  6901700 aatattacttaagaagacatcaaactagaaccactttgttattgaaaaattaaaaaattgtatcgattttattttttatcatgcaaacctttgatttttt 6901601  T
Q  109 attatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatctt 208  Q
    ||||||||||||||| |||||||| || ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||    
T  6901600 attatatttagtcatccactcttgcaactttgtatttttatggttatttgaaagagtcattttaaatcttacgaattctcataaaatactttcaaatttt 6901501  T
Q  209 aaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||    
T  6901500 aaaaaatctttgagttaaaatccttcgaaattttaaaagtcttt 6901457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 6828143 - 6828054
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| ||||||| |||||||| ||||||||||| | || | | |||| ||||||||||  |||||||||||||||||    
T  6828143 agtcatttcaaatcttatgaattcttataaaatactttcaaatctttagaagtttatgagctaaaatccctcaaaatcttaaaagtcttt 6828054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 31495060 - 31495305
Alignment:
Q  10 aatattacttaagaagacatgaaactagaaccactttgttattgnnnnnnnnnnnnnt-gtatcgatttatttctttatcatgcaaacctttgagttttt 108  Q
    ||||||||||||||||||||||||||||||||||||| ||||||             | |||| |||||  || |||||||||||||||||||| |||||    
T  31495060 aatattacttaagaagacatgaaactagaaccactttattattgaaaaattaaaaaattgtattgattttattttttatcatgcaaacctttgatttttt 31495159  T
Q  109 --attatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatc 206  Q
      ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  31495160 ttattatctttagtcatccactcttgtaattttgtatttttgtggttatttgatagagtcatttcaaatcttacgaattctcataaaatactttcaaatc 31495259  T
Q  207 ttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||    
T  31495260 ttaaaaaatctttgagttaaaatccttcgaaatcttaaaagtcttt 31495305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 32631396 - 32631517
Alignment:
Q  125 cactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagtt 224  Q
    |||||||||||||||| ||||||      |||| |||||||||||| |||||||| ||||||||||||| || ||||||||||| |||| ||||||||||    
T  32631396 cactcttgtaattttgaattttttctaaaatttaatagagtcatttcaaatcttaggaattctcataaagtactttcaaatctttaaaagtctttgagtt 32631495  T
Q  225 aaaatcccttgaaatcttaaaa 246  Q
    |||||||||  |||||| ||||    
T  32631496 aaaatccctcaaaatctcaaaa 32631517  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 39300617 - 39300531
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtc 249  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  ||||||||||||||    
T  39300617 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtc 39300531  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 48545227 - 48545142
Alignment:
Q  167 attttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||| |||||||| |||||||||||||||| ||||||||||| | || ||| |||| ||||||||||  |||||| ||||||||||    
T  48545227 atttcaaatcttatgaattctcataaaatactttcaaatctttagaagtctatgagctaaaatccctcaaaatctaaaaagtcttt 48545142  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 36354839 - 36354747
Alignment:
Q  154 atttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaa 246  Q
    |||| ||||||| |||| |||||||| ||||| ||||||| || ||||||||||| |||| ||||||||||||||| |||  |||||| ||||    
T  36354839 atttaatagagtgatttcaaatcttaggaattttcataaagtactttcaaatctttaaaagtctttgagttaaaattcctcaaaatctcaaaa 36354747  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 39300713 - 39300669
Alignment:
Q  67 tgtatcgatttatttctttatcatgcaaacctttgagtttttatt 111  Q
    |||||||||||  || |||||||||||||||||||| ||||||||    
T  39300713 tgtatcgattttattttttatcatgcaaacctttgattttttatt 39300669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 67 - 252
Target Start/End: Original strand, 9174687 - 9174872
Alignment:
Q  67 tgtatcgatttatttctttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtc 166  Q
    |||||||||||  || |||||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||| |||||||||||| ||||| |||||||    
T  9174687 tgtatcgattttattttttatcatgcaaacctttgattttttattatctttagtcatccactcttgtaactttatatttttgtggttatttggtagagtc 9174786  T
Q  167 attttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  9174787 atttcaaatcttacgaattctcataaaatactttcaaatcttaaaaaatcttggagttaaaatcttttgaaatcttaaaagtcttt 9174872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 252
Target Start/End: Original strand, 9832527 - 9832702
Alignment:
Q  67 tgtatcgatttatttctttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtc 166  Q
    |||||||||||  || |||||||||||||||||||| ||||||||     ||||||   ||||||||||||||| ||| |||     |||||||||  ||    
T  9832527 tgtatcgattttattttttatcatgcaaacctttgattttttatt-----tagtca---actcttgtaattttgaattattgctaaaatttgatag--tc 9832616  T
Q  167 attttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  |||||||||||||||||    
T  9832617 atttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtcttt 9832702  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 246
Target Start/End: Complemental strand, 49459442 - 49459278
Alignment:
Q  83 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcatttt-aaatcttacg 181  Q
    |||| ||||||||| ||||| |||| |||||   ||||||| ||||||||||||||| ||||||||     |||||||||||||| ||| ||||||||      
T  49459442 tttaacatgcaaacatttgatttttgattatcactagtcatccactcttgtaattttctatttttgctaaaatttgatagagtcaatttcaaatcttaaa 49459343  T
Q  182 aattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaa 246  Q
    |||||||||||| ||||||||||| ||||||||||| || ||||||||| |   |||||||||||    
T  49459342 aattctcataaagtattttcaaattttaaaaaatctctgggttaaaatctcgcaaaatcttaaaa 49459278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 10897537 - 10897626
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  |||||||||||||||||    
T  10897537 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtcttt 10897626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 33242651 - 33242562
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||| |||| ||| | || ||||||||||| |||||||||||||||||    
T  33242651 agtcatttcaaatcttatgaattctcataaaatgctttcaaatctttaaaagtctataagctaaaatcccttaaaatcttaaaagtcttt 33242562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 36402980 - 36403069
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||| |||| ||| |||| ||||||||||  |||||||||||||||||    
T  36402980 agtcatttcaaatcttatgaattctcataaaatgctttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtcttt 36403069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 9191975 - 9192007
Alignment:
Q  10 aatattacttaagaagacatgaaactagaacca 42  Q
    ||||||||||||||||| |||||||||||||||    
T  9191975 aatattacttaagaagatatgaaactagaacca 9192007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 248
Target Start/End: Complemental strand, 24295974 - 24295830
Alignment:
Q  104 tttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaa 203  Q
    |||||| ||| ||||||||| |||||||| ||| |||||||||||     ||||||| |||||| || ||||||||| |||| |||||||||| ||| ||    
T  24295974 tttttaatatctttagtcatccactcttggaatcttgtatttttgctaaaatttgattgagtcacttcaaatcttacaaattatcataaaataattttaa 24295875  T
Q  204 atcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagt 248  Q
    |||||||||| ||||| |||||||||||||| |||||||||||||    
T  24295874 atcttaaaaagtctttaagttaaaatccctttaaatcttaaaagt 24295830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 37566711 - 37566622
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| |||||||||||||||| |||||||| || |||| ||| |||| ||||||||||  |||||||||||||||||    
T  37566711 agtcatttcaaatcttatgaattctcataaaatactttcaaatatttaaaagtctatgagctaaaatccctcaaaatcttaaaagtcttt 37566622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 30382012 - 30381923
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||| |||| ||| |||| ||||||||||  |||||| ||||||||||    
T  30382012 agtcatttcaaatcttatgaattctcataaaatgctttcaaatctttaaaagtctatgagctaaaatccctcaaaatctcaaaagtcttt 30381923  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 11535570 - 11535659
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  |||||||||||||||||    
T  11535570 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtcttt 11535659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 24192853 - 24192764
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  |||||||||||||||||    
T  24192853 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtcttt 24192764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 24935512 - 24935387
Alignment:
Q  121 cattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttg 220  Q
    |||||||||||||||||||| ||||||      |||| |||||||||||| ||||||||  |||||||||||| || ||||||||||| |||| | ||||    
T  24935512 cattcactcttgtaattttgaattttttctaaaatttaatagagtcatttcaaatcttagaaattctcataaagtactttcaaatctttaaaagtttttg 24935413  T
Q  221 agttaaaatcccttgaaatcttaaaa 246  Q
    |||||||||||||  |||||| ||||    
T  24935412 agttaaaatccctcaaaatctcaaaa 24935387  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 25684201 - 25684080
Alignment:
Q  125 cactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagtt 224  Q
    |||||||||||||||| ||||||      |||| |||||||||||| |||||||| |||||| |||||| || ||||||||||| |||| | ||||||||    
T  25684201 cactcttgtaattttgaattttttctaaaatttaatagagtcatttcaaatcttaggaattcacataaagtactttcaaatctttaaaagtttttgagtt 25684102  T
Q  225 aaaatcccttgaaatcttaaaa 246  Q
    |||||||||  |||||| ||||    
T  25684101 aaaatccctcaaaatctaaaaa 25684080  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 30046483 - 30046560
Alignment:
Q  154 atttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcc 231  Q
    |||| |||||||||||| ||||| || ||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  30046483 atttaatagagtcatttcaaatcctaggaattctcataaagtactttcaaatctttaaaagtctttgagttaaaatcc 30046560  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 30137527 - 30137604
Alignment:
Q  154 atttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcc 231  Q
    |||| |||||||||||| ||||| || ||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  30137527 atttaatagagtcatttcaaatcctaggaattctcataaagtactttcaaatctttaaaagtctttgagttaaaatcc 30137604  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 38821788 - 38821659
Alignment:
Q  83 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacga 182  Q
    ||||||||||||||||||||  ||||| ||| |||   ||| || ||||||||||||| ||||||||    |||||| | ||||||||||||| ||||||    
T  38821788 tttatcatgcaaacctttgatattttaatatttttgtacatccattcttgtaattttgaatttttgttaaaatttgacaaagtcattttaaattttacga 38821689  T
Q  183 attctcataaaatattttcaaatcttaaaa 212  Q
    ||||||| ||| || || ||||||||||||    
T  38821688 attctcacaaagtacttccaaatcttaaaa 38821659  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 252
Target Start/End: Complemental strand, 38534799 - 38534645
Alignment:
Q  95 acctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaa 194  Q
    |||||||| |||||| ||| ||  |||||  |||||||||||||| |||||||||    ||||| ||||||||| |  | ||||||||||||||| |||     
T  38534799 acctttgattttttaatatcttctgtcatctactcttgtaattttttatttttgttaagatttggtagagtcatct--actcttacgaattctcacaaac 38534702  T
Q  195 tattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    || ||| ||||||| |||| ||| |||||||||||||    |||||||| ||||||||    
T  38534701 tactttaaaatctt-aaaagtctatgagttaaaatccacctaaatcttagaagtcttt 38534645  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 54510457 - 54510545
Alignment:
Q  164 gtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  |||||||||||||||||    
T  54510457 gtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtcttt 54510545  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 249
Target Start/End: Original strand, 40144469 - 40144590
Alignment:
Q  126 actcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagtta 225  Q
    ||||||||||||||| |||||||     |||||||||  | |||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||    
T  40144469 actcttgtaattttgaatttttgctaaaatttgatag--ttatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagcta 40144566  T
Q  226 aaatcccttgaaatcttaaaagtc 249  Q
    ||||||||  ||||||||||||||    
T  40144567 aaatccctcaaaatcttaaaagtc 40144590  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 47686736 - 47686806
Alignment:
Q  182 aattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    ||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  |||||||||||||||||    
T  47686736 aattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtcttt 47686806  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 5117712 - 5117796
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagt 248  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||| |||| | | |||| ||||||||||  |||||||||||||    
T  5117712 agtcatttcaaatct-atgaattctcataaaatactttcaaatctttaaaagtttatgaggtaaaatccctcaaaatcttaaaagt 5117796  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 252
Target Start/End: Complemental strand, 33118228 - 33118064
Alignment:
Q  85 tatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaat 184  Q
    |||||||||||||||||| |||||| ||| |||| | ||||||||||||||||||| |||||||     |||||| | || |||||||||||||||||||    
T  33118228 tatcatgcaaacctttgaatttttaatatctttatttattcactcttgtaattttgaatttttgctaaaatttgacaaag-cattttaaatcttacgaat 33118130  T
Q  185 tctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||  |||||||| ||| |||| |||| ||| | ||||||||||| |  ||||||||||| |||||    
T  33118129 tctca-caaatatttccaattctt-aaaagtctataagttaaaatccatccaaatcttaaaaatcttt 33118064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 39337602 - 39337519
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaa 246  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  |||||||||||    
T  39337602 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaa 39337519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 24573872 - 24573743
Alignment:
Q  83 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacga 182  Q
    |||||||||||||||||||| |||||| ||| |||  |||| |||||||||||||||| |||||||     |||||  | || ||||||| |||||||||    
T  24573872 tttatcatgcaaacctttgattttttaatatctttgttcatccactcttgtaattttgaatttttgctaaaatttggcaaagccattttatatcttacga 24573773  T
Q  183 attctcataaaatattttcaaatcttaaaa 212  Q
    ||||||| ||| || || ||||||||||||    
T  24573772 attctcacaaagtacttccaaatcttaaaa 24573743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 252
Target Start/End: Complemental strand, 6783454 - 6783290
Alignment:
Q  83 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacga 182  Q
    ||||||||  |||||||||| |||| ||||| ||||||||| |||||||||||||||  ||| |||     |||| ||||  |||||| |||| ||| ||    
T  6783454 tttatcatataaacctttgactttt-attatctttagtcatccactcttgtaattttaaattattgctaaaattttatag--tcatttcaaattttatga 6783358  T
Q  183 attctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
     ||||||||||||| |||||||||||||||  | | |||| |||||||||||||||||||| ||||||||    
T  6783357 -ttctcataaaatactttcaaatcttaaaagtt-tatgagctaaaatcccttgaaatcttacaagtcttt 6783290  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 27593842 - 27593931
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| |   |||  ||||||||||  |||||||||||||||||    
T  27593842 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagttcatgaactaaaatccctcaaaatcttaaaagtcttt 27593931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 48377792 - 48377841
Alignment:
Q  159 atagagtcattttaaatcttacgaattctcataaaatattttcaaatctt 208  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  48377792 atagagtcattttaaatcttatgaattctcacaaaatactttcaaatctt 48377841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 43151945 - 43152014
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatccct 233  Q
    |||| ||| |||||| | ||||| ||||||| || ||||||||||| |||| |||||||||||||||||||    
T  43151945 agtcgtttcaaatctcatgaattttcataaagtactttcaaatctt-aaaagtctttgagttaaaatccct 43152014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 35165509 - 35165630
Alignment:
Q  125 cactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagtt 224  Q
    |||||||||||||||| ||||||      |||| |||||||||||| |||||||| |||||| |||||| || ||||||||||| |||| | ||||||||    
T  35165509 cactcttgtaattttgaattttttctaaaatttaatagagtcatttcaaatcttaggaattcacataaagtactttcaaatctttaaaagtttttgagtt 35165608  T
Q  225 aaaatcccttgaaatcttaaaa 246  Q
    |||||||||  |||||| ||||    
T  35165609 aaaatccctcaaaatctaaaaa 35165630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 10643352 - 10643263
Alignment:
Q  163 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtcttt 252  Q
    |||||||| |||||||| ||||||| |||||||  |||||||| || | || | | |||| ||||||||||  |||||||||||||||||    
T  10643352 agtcatttcaaatcttatgaattcttataaaattctttcaaatttttataagtttatgagctaaaatccctcaaaatcttaaaagtcttt 10643263  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 17336 - 17283
Alignment:
Q  83 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaat 136  Q
    |||||||||||||||||| | ||||||||||  |||||||| | ||||||||||    
T  17336 tttatcatgcaaacctttaattttttattatcgttagtcatcctctcttgtaat 17283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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