View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5474_high_5 (Length: 561)

Name: NF5474_high_5
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5474_high_5
NF5474_high_5
[»] chr7 (12 HSPs)
chr7 (1-259)||(34525265-34525522)
chr7 (1-259)||(45570339-45570596)
chr7 (1-259)||(17994668-17994925)
chr7 (88-259)||(34530238-34530408)
chr7 (88-259)||(45575312-45575482)
chr7 (88-259)||(17989891-17990061)
chr7 (300-363)||(34525162-34525225)
chr7 (300-362)||(17990102-17990164)
chr7 (300-362)||(17994966-17995028)
chr7 (300-362)||(34530136-34530198)
chr7 (300-362)||(45570237-45570299)
chr7 (300-362)||(45575210-45575272)
[»] chr3 (4 HSPs)
chr3 (1-259)||(35024471-35024728)
chr3 (87-259)||(35029444-35029615)
chr3 (300-362)||(35024369-35024431)
chr3 (300-362)||(35029342-35029404)
[»] chr5 (1 HSPs)
chr5 (359-548)||(998297-998486)
[»] chr4 (1 HSPs)
chr4 (135-191)||(33796378-33796434)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 34525522 - 34525265
Alignment:
Q  1 atccttaccaagcccctctctgcttccagattcttggagctaagaaacaaactaagggtgtctgaccccatgagtttgaggggggactgttagaatatag 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34525522 atccttaccaagcccctctctgcttccagattcttggaactaagaaacaaactaagggtgtctgaccccatgagtttgaggggggactgttagaatatag 34525423  T
Q  101 tatagatagaggctaaacattgaaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagcttatctcttgcatc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34525422 tatagatagaggctaaacattgtaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagcttatctcttgcatc 34525323  T
Q  201 tatataaactcttgtatctctcagattcatttaatacaaaagaatataattttcctatt 259  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  34525322 tatataaactcttgtatctctcagattcatttaatac-aaagaatatatttttcctatt 34525265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 45570596 - 45570339
Alignment:
Q  1 atccttaccaagcccctctctgcttccagattcttggagctaagaaacaaactaagggtgtctgaccccatgagtttgaggggggactgttagaatatag 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45570596 atccttaccaagcccctctctgcttccagattcttggaactaagaaacaaactaagggtgtctgaccccatgagtttgaggggggactgttagaatatag 45570497  T
Q  101 tatagatagaggctaaacattgaaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagcttatctcttgcatc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45570496 tatagatagaggctaaacattgtaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagcttatctcttgcatc 45570397  T
Q  201 tatataaactcttgtatctctcagattcatttaatacaaaagaatataattttcctatt 259  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  45570396 tatataaactcttgtatctctcagattcatttaatac-aaagaatatacttttcctatt 45570339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 17994668 - 17994925
Alignment:
Q  1 atccttaccaagcccctctctgcttccagattcttggagctaagaaacaaactaagggtgtctgaccccatgagtttgaggggggactgttagaatatag 100  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||     
T  17994668 atccttaccaagccccactctgcttccagattcttggagctcagaaacaaactaagggtgtctgaccccatgagattgaggggggactgttagagtataa 17994767  T
Q  101 tatagatagaggctaaacattgaaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagcttatctcttgcatc 200  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17994768 tatagatagaggctaaacattgtaactatcttactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagcttatctctttcatc 17994867  T
Q  201 tatataaactcttgtatctctcagattcatttaatacaaaagaatataattttcctatt 259  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  17994868 tatataaactcttgtatctctcagattcattcaatac-aaagaatatatttttcctatt 17994925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 34530408 - 34530238
Alignment:
Q  88 tgttagaatatagtatagatagaggctaaacattgaaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagct 187  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34530408 tgttagaatatagtatagatagaggctaaacattgtaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagct 34530309  T
Q  188 tatctcttgcatctatataaactcttgtatctctcagattcatttaatacaaaagaatataattttcctatt 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  34530308 tatctcttgcatctatataaactcttgtatctctcagattcatttaatac-aaagaatatatttttcctatt 34530238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 45575482 - 45575312
Alignment:
Q  88 tgttagaatatagtatagatagaggctaaacattgaaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagct 187  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45575482 tgttagaatatagtatagatagaggctaaacattgtaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagct 45575383  T
Q  188 tatctcttgcatctatataaactcttgtatctctcagattcatttaatacaaaagaatataattttcctatt 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  45575382 tatctcttgcatctatataaactcttgtatctctcagattcatttaatac-aaagaatatactttccctatt 45575312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 17989891 - 17990061
Alignment:
Q  88 tgttagaatatagtatagatagaggctaaacattgaaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagct 187  Q
    ||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17989891 tgttagagtataatatagatagaggctaaacattgtaactatcttactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagct 17989990  T
Q  188 tatctcttgcatctatataaactcttgtatctctcagattcatttaatacaaaagaatataattttcctatt 259  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  17989991 tatctctttcatctatataaactcttgtatctctcagattcattcaatac-aaagaatatatttttcctatt 17990061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 34525225 - 34525162
Alignment:
Q  300 aacaaacttctgtaacaaacttcaatcctcaaggttcatcaatggcggtttcagtttctattaa 363  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  34525225 aacaaacttctgtaacaaacttcaaccttcaaggttcatcaatggcggtttcagtttctattaa 34525162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 17990102 - 17990164
Alignment:
Q  300 aacaaacttctgtaacaaacttcaatcctcaaggttcatcaatggcggtttcagtttctatta 362  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  17990102 aacaaacttctgtaacaaacttcaaccttcaaggttcatcaatggcggtttcagtttctatta 17990164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 17994966 - 17995028
Alignment:
Q  300 aacaaacttctgtaacaaacttcaatcctcaaggttcatcaatggcggtttcagtttctatta 362  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  17994966 aacaaacttctgtaacaaacttcaaccttcaaggttcatcaatggcggtttcagtttctatta 17995028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 34530198 - 34530136
Alignment:
Q  300 aacaaacttctgtaacaaacttcaatcctcaaggttcatcaatggcggtttcagtttctatta 362  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  34530198 aacaaacttctgtaacaaacttcaaccttcaaggttcatcaatggcggtttcagtttctatta 34530136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 45570299 - 45570237
Alignment:
Q  300 aacaaacttctgtaacaaacttcaatcctcaaggttcatcaatggcggtttcagtttctatta 362  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  45570299 aacaaacttctgtaacaaacttcaaccttcaaggttcatcaatggcggtttcagtttctatta 45570237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 45575272 - 45575210
Alignment:
Q  300 aacaaacttctgtaacaaacttcaatcctcaaggttcatcaatggcggtttcagtttctatta 362  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  45575272 aacaaacttctgtaacaaacttcaaccttcaaggttcatcaatggcggtttcagtttctatta 45575210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 35024728 - 35024471
Alignment:
Q  1 atccttaccaagcccctctctgcttccagattcttggagctaagaaacaaactaagggtgtctgaccccatgagtttgaggggggactgttagaatatag 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35024728 atccttaccaagcccctctctgcttccagattcttggaactaagaaacaaactaagggtgtctgaccccatgagtttgaggggggactgttagaatatag 35024629  T
Q  101 tatagatagaggctaaacattgaaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagcttatctcttgcatc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35024628 tatagatagaggctaaacattgtaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagcttatctcttgcatc 35024529  T
Q  201 tatataaactcttgtatctctcagattcatttaatacaaaagaatataattttcctatt 259  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  35024528 tatataaactcttgtatctctcagattcatttaatac-aaagaatatatttttcctatt 35024471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 87 - 259
Target Start/End: Complemental strand, 35029615 - 35029444
Alignment:
Q  87 ctgttagaatatagtatagatagaggctaaacattgaaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagc 186  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35029615 ctgttagaatatagtatagatagaggctaaacattgtaactatctaactagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagc 35029516  T
Q  187 ttatctcttgcatctatataaactcttgtatctctcagattcatttaatacaaaagaatataattttcctatt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  35029515 ttatctcttgcatctatataaactcttgtatctctcagattcatttaatac-aaagaatatatttttcctatt 35029444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 35024431 - 35024369
Alignment:
Q  300 aacaaacttctgtaacaaacttcaatcctcaaggttcatcaatggcggtttcagtttctatta 362  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  35024431 aacaaacttctgtaacaaacttcaaccttcaaggttcatcaatggcggtttcagtttctatta 35024369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 35029404 - 35029342
Alignment:
Q  300 aacaaacttctgtaacaaacttcaatcctcaaggttcatcaatggcggtttcagtttctatta 362  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  35029404 aacaaacttctgtaacaaacttcaaccttcaaggttcatcaatggcggtttcagtttctatta 35029342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 359 - 548
Target Start/End: Original strand, 998297 - 998486
Alignment:
Q  359 attaaaacctagccaatctttttacctttaacttcctcaagatgagtgatagaacgaatttctgattcccccggggatacatgatggttttcaccgatag 458  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  998297 attagaacctagccaatctttttacctttaactccctcaagatgagtgatagaacgaatttctgattcccccggggatacatgatggttttcaccgatag 998396  T
Q  459 tatgtccgcctgataccaaagttcgtccaaataatcttgcagtagatatgttacgattgataaatgaagtttcttgctccttagaataat 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  998397 tatgtccgcctgataccaaagttcgtccaaataatcttgcagtagatatgttacgattgataaatgaagtttcttgctccttagaataat 998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 33796434 - 33796378
Alignment:
Q  135 tagtcttaagctctagtctatcagattgtgacatgtgtcacatatctctagcttatc 191  Q
    ||||||| |||||||| | || |||||||||||||||||||||||||||||||||||    
T  33796434 tagtcttgagctctagccaattagattgtgacatgtgtcacatatctctagcttatc 33796378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University