View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_high_6 (Length: 556)
Name: NF5474_high_6
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 274 - 547
Target Start/End: Complemental strand, 479627 - 479354
Alignment:
| Q |
274 |
gcaatgaaagagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccct |
373 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479627 |
gcaatgaaatagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccct |
479528 |
T |
|
| Q |
374 |
gcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcc |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479527 |
gcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcc |
479428 |
T |
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| Q |
474 |
catctttgctttccaaattacacacgatgcttatgctgtgtgaagagaataagaaatttattatatatattctt |
547 |
Q |
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| T |
479427 |
catctttgctttccaaattatacacgatgcttatgttgtgtgaagagaagaagaaatttattatatatattctt |
479354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 479880 - 479689
Alignment:
| Q |
21 |
gattcaatgtaatgctgcaacatatatagagccatgataacacaaatcaatctcacgtacatgagtgtaaatatgcgtttatattattattactagagaa |
120 |
Q |
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| T |
479880 |
gattcaatgtaatgctgcaacatatatagagccatgataacacaaatcaatctcaggtacatgagtgtaaatatgcgtttatattattattactagagaa |
479781 |
T |
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| Q |
121 |
tggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaagaaac |
212 |
Q |
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| T |
479780 |
tggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaagaaac |
479689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 288 - 490
Target Start/End: Complemental strand, 474139 - 473937
Alignment:
| Q |
288 |
gtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaatt |
387 |
Q |
| |
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|||||| || |||||||||| |||||||||| ||||||||||| |||| |||||| |||||||||| | || |||| ||||| ||||| | | |
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| T |
474139 |
gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgact |
474040 |
T |
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| Q |
388 |
cttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgctttcc |
487 |
Q |
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||| |||||| | || ||||||||||||||||| |||||| |||||| |||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
474039 |
cttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctttcc |
473940 |
T |
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| Q |
488 |
aaa |
490 |
Q |
| |
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||| |
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| T |
473939 |
aaa |
473937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 289 - 463
Target Start/End: Complemental strand, 466672 - 466498
Alignment:
| Q |
289 |
tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattc |
388 |
Q |
| |
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||||| || |||||||| | |||||||||| ||||||||||| |||| |||||| |||||||||||||| || |||| ||||| ||||| | | |||| |
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| T |
466672 |
taccctgataaataagcgaggggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattc |
466573 |
T |
|
| Q |
389 |
ttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt |
463 |
Q |
| |
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||||||||| | | ||||||| |||| |||| |||||||| |||| | |||||||| |||||||||||||||| |
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| T |
466572 |
ttgtgccaagagtctgacctgcaaatattaactgtatcaacaacataactattattggcaggtagtactccatgt |
466498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 466835 - 466743
Alignment:
| Q |
115 |
agagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa |
207 |
Q |
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||||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||||||||| |||||||| |||||||| |||||||| |||| |
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| T |
466835 |
agagaatggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactccttaaattcaaggaatatgagccagagtttctcctgtcaa |
466743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 406 - 490
Target Start/End: Complemental strand, 454850 - 454763
Alignment:
| Q |
406 |
cctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaac---atcccatctttgctttccaaa |
490 |
Q |
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|||| ||||||||||| | |||||||||| |||| || |||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
454850 |
cctgaatatataaactgtgtcaacaccatggccaatactggaaggtagtactccatgtctaaacaatatcccatctttactttccaaa |
454763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 445863 - 445767
Alignment:
| Q |
298 |
aaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattcttgtgc |
394 |
Q |
| |
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|||||||||| |||||||||| ||||||||||| ||||| |||||||| |||||||| | ||||||| ||||| ||||| | |||||||||||| |
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| T |
445863 |
aaataagcaattggagcaagaaaaatggttgcaaaagcattacggtacattacaaataccgccgggctcataccctccaaaagtgcaattcttgtgc |
445767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 454956 - 454890
Alignment:
| Q |
289 |
tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaata |
355 |
Q |
| |
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||||| || |||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||| |
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|
| T |
454956 |
tacccagataaataagcaatgggagcaagaagaatggttgcaaaagcatgacggtaaactataaata |
454890 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 455121 - 455041
Alignment:
| Q |
122 |
ggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcct |
202 |
Q |
| |
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|||||| ||||||||||||||||| | ||| | | | |||||||| ||||||||||||||||||||| ||| |||||||| |
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| T |
455121 |
ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctcct |
455041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 474276 - 474232
Alignment:
| Q |
159 |
gaaaaactccttaaatttaaggaataagagccagaatttctccta |
203 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
474276 |
gaaaaactccttaaatttaaggaataagaggcagagtttctccta |
474232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 446108 - 446009
Alignment:
| Q |
108 |
tattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa |
207 |
Q |
| |
|
|||||||||| |||| |||| |||| ||||||||| || | ||||| | | |||||||||||||| |||||||| || ||| |||| |||||||| |||| |
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| T |
446108 |
tattactagaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctcctgtcaa |
446009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 286 - 463
Target Start/End: Original strand, 27493754 - 27493931
Alignment:
| Q |
286 |
aagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaa |
385 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| ||||||||||| ||||| || || |||||||||| | | || |||||||||| ||||| ||||| |
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| T |
27493754 |
aagtaccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaa |
27493853 |
T |
|
| Q |
386 |
ttcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt |
463 |
Q |
| |
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||||||| |||| | ||| |||| |||||| |||| |||||| | |||| |||||||||| | |||||||||||||| |
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| T |
27493854 |
ttcttgtaccaagagtcaagcctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgt |
27493931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 27493536 - 27493624
Alignment:
| Q |
117 |
agaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaat---aagagccagaatttctcct |
202 |
Q |
| |
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||||| ||||| ||||||| |||||| || | ||||| | ||||||||||| ||||||||||||||| | ||||||||||||||||| |
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| T |
27493536 |
agaatagaaacaaacccaactagtgaagtgatgaatatccaagaaaaactctttaaatttaaggaatgggaggagccagaatttctcct |
27493624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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