View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5474_high_9 (Length: 489)

Name: NF5474_high_9
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5474_high_9
NF5474_high_9
[»] chr6 (4 HSPs)
chr6 (19-193)||(35042932-35043105)
chr6 (242-329)||(35043112-35043199)
chr6 (331-397)||(35043225-35043291)
chr6 (331-366)||(35042800-35042835)
[»] chr4 (4 HSPs)
chr4 (110-237)||(50847638-50847762)
chr4 (393-433)||(29101906-29101946)
chr4 (335-391)||(50847309-50847365)
chr4 (393-433)||(52413657-52413697)
[»] chr2 (2 HSPs)
chr2 (395-433)||(36237617-36237655)
chr2 (397-433)||(8541737-8541773)
[»] chr5 (2 HSPs)
chr5 (396-433)||(23995293-23995330)
chr5 (395-435)||(234684-234724)
[»] scaffold1862 (1 HSPs)
scaffold1862 (393-433)||(67-107)
[»] chr1 (2 HSPs)
chr1 (393-433)||(23621648-23621688)
chr1 (393-433)||(23738401-23738441)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 35042932 - 35043105
Alignment:
Q  19 aataatcatgctgcagttttgtgagagtcagtaaattcttatatatatcctaattggttggggatcttaatctcgcaagccactgagatcatttaccata 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35042932 aataatcatgctgcagttttgtgagagtcagtcaattcttatatatatcctaattggttggggatcttaatctcgcaagccactgagaacatttaccata 35043031  T
Q  119 actaattcgcaggggctttgtcactaaataatcccaattgtgtatagggatcttgatttcaactcattgcacata 193  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  35043032 actaattcgca-gggctttgtcactaaataatcccaattgtatatagggatcttgatttcaactcattgaacata 35043105  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 35043112 - 35043199
Alignment:
Q  242 ttataagcattatgaatgcataagttacacctaataatgtttctaaagaatcaaaattaaaggatagcaagaaacgataaatgatttt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  35043112 ttataagcattatgaatgcataagttacacctaataatgtttctaaataatgaaaattaaaggatagcaagaaacgataaatgatttt 35043199  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 397
Target Start/End: Original strand, 35043225 - 35043291
Alignment:
Q  331 tcaggtgtgatcctttaataattttattttgttgggataataggagccattggatcaaagaattaca 397  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  35043225 tcaggtgtgatccttcaataattttattttgttgggataataggagtaattggatcaaagaattaca 35043291  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 366
Target Start/End: Complemental strand, 35042835 - 35042800
Alignment:
Q  331 tcaggtgtgatcctttaataattttattttgttggg 366  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35042835 tcaggtgtgatccttcaataattttattttgttggg 35042800  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 50847638 - 50847762
Alignment:
Q  110 tttaccataactaattcgcaggggctttgtcactaaataatcccaattgt--gtatagggatcttgatttcaactcattgcacatatatagctttcttca 207  Q
    |||||||||||| ||||  |||| ||||| ||||||||||||||||||||  || |||||||||||||||||||| ||| |    | |||| |||||||     
T  50847638 tttaccataactcattcagagggactttgccactaaataatcccaattgtcagt-tagggatcttgatttcaactaatttc----aaataggtttcttcg 50847732  T
Q  208 accaattcttttcacgtgaaaataacaaga 237  Q
    |||| || ||||||||||||||||||||||    
T  50847733 accattttttttcacgtgaaaataacaaga 50847762  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 29101906 - 29101946
Alignment:
Q  393 ttacacctgatgtcaacggatcctgcctctctatatatata 433  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  29101906 ttacacctgatgtcaacggatcctgcctatatatatatata 29101946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 50847365 - 50847309
Alignment:
Q  335 gtgtgatcctttaataattttattttgttgggataataggagccattggatcaaaga 391  Q
    ||||||||||| |||| ||| ||||||||||||||||| ||||| |||||| |||||    
T  50847365 gtgtgatccttcaatattttcattttgttgggataatacgagcctttggattaaaga 50847309  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 52413657 - 52413697
Alignment:
Q  393 ttacacctgatgtcaacggatcctgcctctctatatatata 433  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  52413657 ttacacctggtgtcaacggatcctgtctctatatatatata 52413697  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 36237655 - 36237617
Alignment:
Q  395 acacctgatgtcaacggatcctgcctctctatatatata 433  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  36237655 acacctggtgtcaacggatcctgactctctatatatata 36237617  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 8541773 - 8541737
Alignment:
Q  397 acctgatgtcaacggatcctgcctctctatatatata 433  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  8541773 acctgatgtcaacggatcctgactctatatatatata 8541737  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Complemental strand, 23995330 - 23995293
Alignment:
Q  396 cacctgatgtcaacggatcctgcctctctatatatata 433  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  23995330 cacctgatgtcaacggatcctgactctatatatatata 23995293  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 234724 - 234684
Alignment:
Q  395 acacctgatgtcaacggatcctgcctctctatatatataaa 435  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  234724 acacctggtgtcaacggatcctgactctatatatatataaa 234684  T

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Target: scaffold1862 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 67 - 107
Alignment:
Q  393 ttacacctgatgtcaacggatcctgcctctctatatatata 433  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  67 ttacacctggtgtcaacggatcctgtctctatatatatata 107  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 23621688 - 23621648
Alignment:
Q  393 ttacacctgatgtcaacggatcctgcctctctatatatata 433  Q
    ||||||||| |||||||||||||| ||||| ||||||||||    
T  23621688 ttacacctggtgtcaacggatcctacctctatatatatata 23621648  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 23738441 - 23738401
Alignment:
Q  393 ttacacctgatgtcaacggatcctgcctctctatatatata 433  Q
    ||||||||| ||||||| |||||| ||||||||||||||||    
T  23738441 ttacacctggtgtcaacagatcctacctctctatatatata 23738401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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