View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_low_11 (Length: 467)
Name: NF5474_low_11
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 25564682 - 25565135
Alignment:
| Q |
1 |
ctgacagaggaatttactacagacaaaagtcatcttttaagtttattcaagtttaaaatgtgaataatatattaatcatttgataatgtaacttcaaaca |
100 |
Q |
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| T |
25564682 |
ctgacagaggaatttactacagacaaaagtcatcttttaagtttattcaaggttaaaatgtgaataatatattaatcattt-ataaggtaacttcaaaca |
25564780 |
T |
|
| Q |
101 |
ttatctagtttagattgaaaaggaagcaaagatgggcacattgcatttgcagagagtcagagacatttgctatcgtgaagaactcagttgatagcaatct |
200 |
Q |
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| T |
25564781 |
ttatctagtttagattgaaaaggaagcaaagatgggcacattgcatttgcagagagtcagagacatttgctatcgtgaagaactctgttgatagcaatct |
25564880 |
T |
|
| Q |
201 |
catatcattatcaggcactgaaatcatcaatttttgttcagtattttctacctagaaggtgaaaataaatatatatttagagtatcatgccatttcctag |
300 |
Q |
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| T |
25564881 |
catatcattatcaggcactgaaatcatcaatttttgttcagtattttctacctagaaggtgaaaataaatatatatttagagtatcatgccatttcctag |
25564980 |
T |
|
| Q |
301 |
ggaaaaaagattcagttgctttcattcctaagatacaaattaagtatttaggcattaatctcattcggaattagcattgactgcgtttttgaaatggtgg |
400 |
Q |
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| T |
25564981 |
ggaaaaaagattcagttgctttcattcctaagatacaaattaagtatttgggcattaatctcattcgaaattagcattgactgcgtttttgaaatggtgg |
25565080 |
T |
|
| Q |
401 |
agacgggcatacaagggaaactgaacaggtcagaa-aaattacatacctgaaatc |
454 |
Q |
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| T |
25565081 |
agacgggcatacaagggaaactgaacaggtcagaagaatttacatacctgaaatc |
25565135 |
T |
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