View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5474_low_12 (Length: 463)

Name: NF5474_low_12
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5474_low_12
NF5474_low_12
[»] chr2 (12 HSPs)
chr2 (121-452)||(14781771-14782095)
chr2 (16-94)||(14781669-14781747)
chr2 (276-323)||(31469135-31469182)
chr2 (283-323)||(41374593-41374633)
chr2 (276-323)||(2884255-2884302)
chr2 (276-323)||(31469070-31469117)
chr2 (265-323)||(10459254-10459312)
chr2 (277-323)||(44726846-44726892)
chr2 (278-323)||(15660715-15660760)
chr2 (330-379)||(16564439-16564488)
chr2 (283-323)||(16180499-16180539)
chr2 (328-376)||(38935364-38935412)
[»] chr6 (3 HSPs)
chr6 (269-323)||(7343305-7343359)
chr6 (330-381)||(30531241-30531292)
chr6 (283-323)||(28756663-28756703)
[»] chr1 (9 HSPs)
chr1 (274-323)||(29855122-29855171)
chr1 (328-377)||(37918914-37918963)
chr1 (276-323)||(3739813-3739860)
chr1 (276-323)||(3739878-3739925)
chr1 (276-323)||(19758335-19758382)
chr1 (276-321)||(24023990-24024035)
chr1 (276-323)||(30693334-30693381)
chr1 (279-323)||(21242159-21242203)
chr1 (283-323)||(35310316-35310356)
[»] chr8 (6 HSPs)
chr8 (281-323)||(44080739-44080781)
chr8 (278-323)||(33557839-33557884)
chr8 (276-323)||(11114300-11114347)
chr8 (276-322)||(35901100-35901146)
chr8 (329-378)||(32729724-32729773)
chr8 (283-323)||(29111023-29111063)
[»] chr3 (4 HSPs)
chr3 (281-323)||(31280159-31280201)
chr3 (277-323)||(46829106-46829152)
chr3 (276-323)||(46829048-46829095)
chr3 (282-323)||(2983176-2983217)
[»] chr5 (7 HSPs)
chr5 (283-323)||(38958067-38958107)
chr5 (283-323)||(42324944-42324984)
chr5 (276-323)||(39030562-39030609)
chr5 (276-323)||(42708581-42708628)
chr5 (281-323)||(30293380-30293422)
chr5 (266-323)||(34252706-34252763)
chr5 (328-388)||(12619680-12619740)
[»] chr7 (2 HSPs)
chr7 (276-323)||(27147596-27147643)
chr7 (266-322)||(16866390-16866446)
[»] chr4 (4 HSPs)
chr4 (276-323)||(2734178-2734225)
chr4 (276-323)||(12276819-12276866)
chr4 (278-323)||(40391257-40391302)
chr4 (266-298)||(1619903-1619935)
[»] scaffold0126 (1 HSPs)
scaffold0126 (283-323)||(28173-28213)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 121 - 452
Target Start/End: Original strand, 14781771 - 14782095
Alignment:
Q  121 acattagtgagtacaattttattaatcaaaagttcaagttactaccaatatgttcaatctaaactttgatatataatacaaaccttgaactttttaattg 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14781771 acattagtgagtacaattttattaatcaaaagttcatgttactaccaatatgttcaatttaaactttgatatataatacaaaccttgaactttttaattg 14781870  T
Q  221 accgaaactatactttccattaacaatcactgtactcatctaagaaatactctcaccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgta 320  Q
    || ||       | | ||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14781871 actga-------cgtcccattaatactcactgtactcacctaaaaaatactctcaccgtcctaaaatataagtaaaaattgattaacgaaagttaatgta 14781963  T
Q  321 tttttgaatcaaatacaccaacttatgttgattcaattttgcttacgttttgggacggaggaaatattattcaactagttgcacctctactccttctcat 420  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||    
T  14781964 tttttgaaccaaatacactaacttatgttgactcaattttgcttacgttttgggacggatggagtattattcaaccagttgcacctctactccttctcat 14782063  T
Q  421 agtactcaactccatggaagaatcattccttt 452  Q
    ||||||||||||||||||||||||||||||||    
T  14782064 agtactcaactccatggaagaatcattccttt 14782095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 14781669 - 14781747
Alignment:
Q  16 caaaatggaccaaacccatccaattatatttgttttcatccaacaattatataaaacatgtagcgtctaactatatctg 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14781669 caaaatggaccaaacccatccaattatatttgttttcatccaacaattatataaaacatgtagcgtctaactatatctg 14781747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 31469182 - 31469135
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||| |||||||||| |||||||| |||||||||||||||||||||    
T  31469182 ccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtattt 31469135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 41374633 - 41374593
Alignment:
Q  283 aaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  41374633 aaaatataagtaaaaattagtcaacgaaagttaatgtattt 41374593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 2884255 - 2884302
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||||||||||||||||||||||  ||||| ||| |||||||||||    
T  2884255 ccgtcctaaaatataagtaaaaatttgtcaacaaaaattaatgtattt 2884302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 31469070 - 31469117
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||| |||||||||| |||||||| ||||| |||||||||||||||    
T  31469070 ccgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtattt 31469117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 10459254 - 10459312
Alignment:
Q  265 aaatactctcaccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||||| | || ||| |||||||||| |||||||| ||||| |||||||||||||||    
T  10459254 aaatactccctccttcccaaaatataagcaaaaattggtcaacaaaagttaatgtattt 10459312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 44726892 - 44726846
Alignment:
Q  277 cgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||| |||||||||| |||||||||||||| ||| |||||||||||    
T  44726892 cgtccaaaaatataagaaaaaattgatcaacaaaaattaatgtattt 44726846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 15660760 - 15660715
Alignment:
Q  278 gtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||| ||||||||||||||  || |||||||||||    
T  15660760 gtcctaaaatataagcaaaaattgatcaacacaaattaatgtattt 15660715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 16564439 - 16564488
Alignment:
Q  330 caaatacaccaacttatgttgattcaattttgcttacgttttgggacgga 379  Q
    |||||||| ||||||||||||| ||| |||| ||||| ||||||||||||    
T  16564439 caaatacatcaacttatgttgactcatttttacttacattttgggacgga 16564488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 16180539 - 16180499
Alignment:
Q  283 aaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||| ||| ||||| |||||||||||||||    
T  16180539 aaaatataagtaaaatttggtcaacaaaagttaatgtattt 16180499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 38935412 - 38935364
Alignment:
Q  328 atcaaatacaccaacttatgttgattcaattttgcttacgttttgggac 376  Q
    |||||||||| ||||||||||||| ||| |||||||||  |||||||||    
T  38935412 atcaaatacatcaacttatgttgactcatttttgcttatattttgggac 38935364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 7343359 - 7343305
Alignment:
Q  269 actctcaccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  7343359 actctctccgtcctaaaatataagtaaaaattgatcaacaaaagttaatatattt 7343305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 30531241 - 30531292
Alignment:
Q  330 caaatacaccaacttatgttgattcaattttgcttacgttttgggacggagg 381  Q
    |||||||| ||||||||||||| ||| |||||||||| ||||||||||||||    
T  30531241 caaatacatcaacttatgttgagtcatttttgcttacattttgggacggagg 30531292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 28756663 - 28756703
Alignment:
Q  283 aaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||||||| |||| ||| |||||||||||||||||||||    
T  28756663 aaaatataagcaaaatttggtcaacgaaagttaatgtattt 28756703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 29855171 - 29855122
Alignment:
Q  274 caccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  29855171 caccgtcctaaaatataagcaaaaattgatcaacaaaagttaatgtattt 29855122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 37918963 - 37918914
Alignment:
Q  328 atcaaatacaccaacttatgttgattcaattttgcttacgttttgggacg 377  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||||||    
T  37918963 atcaaatacatcaacttatgttgattcatttttgcttacattttgggacg 37918914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 3739813 - 3739860
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||| |||||||||| |||||||| |||||||||||||||||||||    
T  3739813 ccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtattt 3739860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 3739925 - 3739878
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||||    
T  3739925 ccgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtattt 3739878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 19758382 - 19758335
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  19758382 ccgtcataaaatataagtaaaaattggtcaacaaaagttaatgtattt 19758335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 24024035 - 24023990
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtat 321  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||    
T  24024035 ccgtcctaaaatataacaaaaaattgatcaacaaaagttaatgtat 24023990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 30693334 - 30693381
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||| ||||||||| ||||||||||||||| ||| |||||||||||    
T  30693334 ccgtccgaaaatataaataaaaattgatcaacaaaaattaatgtattt 30693381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 21242203 - 21242159
Alignment:
Q  279 tcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||||||||||  |||||||||||||| ||| |||||||||||    
T  21242203 tcctaaaatataaaaaaaaattgatcaacaaaaattaatgtattt 21242159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 35310356 - 35310316
Alignment:
Q  283 aaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||||| ||||| ||| |||||||||||    
T  35310356 aaaatataagtaaaaattggtcaacaaaaattaatgtattt 35310316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 44080781 - 44080739
Alignment:
Q  281 ctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||||||||||||| ||| |||||||||||    
T  44080781 ctaaaatataagtaaaaattgatcaacaaaaattaatgtattt 44080739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 33557884 - 33557839
Alignment:
Q  278 gtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||    
T  33557884 gtcctaaaacataagtaaaaattgatcaataaaagttaatgtattt 33557839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 11114347 - 11114300
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||| |||||||||||||||||||||||||  ||||| ||||||||    
T  11114347 ccgtcccaaaatataagtaaaaattgatcaacataagttgatgtattt 11114300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 35901146 - 35901100
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtatt 322  Q
    ||||||||||||||||| |||||| | ||||| ||||||||||||||    
T  35901146 ccgtcctaaaatataagcaaaaataggtcaacaaaagttaatgtatt 35901100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 32729773 - 32729724
Alignment:
Q  329 tcaaatacaccaacttatgttgattcaattttgcttacgttttgggacgg 378  Q
    ||||||||| ||| || |||||||||| |||||||||| |||||||||||    
T  32729773 tcaaatacatcaatttttgttgattcatttttgcttacattttgggacgg 32729724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 29111063 - 29111023
Alignment:
Q  283 aaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||||||  |||||||||||||||||| |||||||||||    
T  29111063 aaaatataaacaaaaattgatcaacgaaacttaatgtattt 29111023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 31280159 - 31280201
Alignment:
Q  281 ctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||||||||||||| ||| |||||||||||    
T  31280159 ctaaaatataagtaaaaattgatcaacaaaatttaatgtattt 31280201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 46829152 - 46829106
Alignment:
Q  277 cgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||||    
T  46829152 cgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtattt 46829106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 46829048 - 46829095
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||| |||||||| ||||| ||||| |||||||||    
T  46829048 ccgtcctaaaatataagcaaaaattggtcaacaaaagtcaatgtattt 46829095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 2983176 - 2983217
Alignment:
Q  282 taaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||||||||||||||||||||||  ||||||||| |||||    
T  2983176 taaaatataagtaaaaattgatcaataaaagttaatatattt 2983217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 38958067 - 38958107
Alignment:
Q  283 aaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  38958067 aaaatataagtaaaaattgattaacaaaagttaatgtattt 38958107  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 42324984 - 42324944
Alignment:
Q  283 aaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  42324984 aaaatataagtaaaaattggtcaacaaaagttaatgtattt 42324944  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 39030562 - 39030609
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||| |||||||||||| |||||||| ||||| |||||||||||||||    
T  39030562 ccgttctaaaatataagcaaaaattggtcaacaaaagttaatgtattt 39030609  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 42708581 - 42708628
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||| | ||||||| |||||| |||||||||||||||    
T  42708581 ccgtcctaaaatatacgcaaaaattaatcaacaaaagttaatgtattt 42708628  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 30293380 - 30293422
Alignment:
Q  281 ctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||    
T  30293380 ctaaaatataagtaaaatttgatcaacaaaagtcaatgtattt 30293422  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 34252706 - 34252763
Alignment:
Q  266 aatactctcaccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||| | |||||| ||||| |||| |||||||| ||||| |||||||||||||||    
T  34252706 aatactccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtattt 34252763  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 12619680 - 12619740
Alignment:
Q  328 atcaaatacaccaacttatgttgattcaattttgcttacgttttgggacggaggaaatatt 388  Q
    |||||||||| |||||||||||||| || |||||||||  ||||| |||| | ||||||||    
T  12619680 atcaaatacatcaacttatgttgatccatttttgcttatattttgagacgaatgaaatatt 12619740  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 27147596 - 27147643
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||| ||||||||||||||||||||  ||||| |||||||||||||||    
T  27147596 ccgttctaaaatataagtaaaaattagtcaacaaaagttaatgtattt 27147643  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 16866390 - 16866446
Alignment:
Q  266 aatactctcaccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtatt 322  Q
    ||||||| | || ||| |||||||||| |||||||||||||  ||||||||||||||    
T  16866390 aatactccctccatcccaaaatataagcaaaaattgatcaataaaagttaatgtatt 16866446  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 2734178 - 2734225
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||||| ||||||||||||||||||  ||||| |||||||||||||||    
T  2734178 ccgtcccaaaatataagtaaaaattagtcaacaaaagttaatgtattt 2734225  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 12276819 - 12276866
Alignment:
Q  276 ccgtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||||||||||||||| |||| ||| | |||||||||||||||    
T  12276819 ccgtcctaaaatataagtaaagattggtcagcaaaagttaatgtattt 12276866  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 40391257 - 40391302
Alignment:
Q  278 gtcctaaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||||||    
T  40391257 gtcccaaaatataagtaaaaatcgatcaacaaaaattaatgtattt 40391302  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 1619903 - 1619935
Alignment:
Q  266 aatactctcaccgtcctaaaatataagtaaaaa 298  Q
    ||||||||| |||||||||||||||||||||||    
T  1619903 aatactctctccgtcctaaaatataagtaaaaa 1619935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 28173 - 28213
Alignment:
Q  283 aaaatataagtaaaaattgatcaacgaaagttaatgtattt 323  Q
    ||||||||| ||||||||||| ||| |||||||||||||||    
T  28173 aaaatataaataaaaattgattaacaaaagttaatgtattt 28213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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