View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5474_low_13 (Length: 442)
Name: NF5474_low_13
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 25564694 - 25564256
Alignment:
| Q |
1 |
attcctctgtcagcatttgatattgttctcaataaagcaatactgactacattttcatgtgcctttctgataggttgctgccaattatgttgcaatggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25564694 |
attcctctgtcagcatttgatattgttctcaataaagcaatactgactacattttcatgtgcctttctgataggttgctgccaattatgttgcaatggtt |
25564595 |
T |
|
| Q |
101 |
ccatctggacaaatatttgataggtatccgccaattacaaagttctatcactctttcgttagtccttaaattacaagatcagctagtcatgtttgctgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25564594 |
ccatctggacaaatatttgataggtatccgccaattacaaagttctatcgctctttcgttagtccttaaattacaagatcagctagtcatgtttgctgtt |
25564495 |
T |
|
| Q |
201 |
gtatatatatgataagtattgtttgaattgaacttccttcggagtgaaatataagcaaacttcactcatgttaatttcttctctcctaataagatgttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25564494 |
gtatatatatgataagtattgtttgaattgaacttccttcggagtgtaatataagcaaacttcactcatgttaatttcttctctcctaataagatgttga |
25564395 |
T |
|
| Q |
301 |
attgtgctattaacaatattctacagttggccacatttagaaaacagcaagtactattggaaagctttggtgttttaacttgatagttccnnnnnnncag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25564394 |
attgtgctattaacaatattctacagttggccacatttagaaaacagcaagtactattggaaagctttggtgttttaacttgatagttcctttttttcag |
25564295 |
T |
|
| Q |
401 |
ttttctgtcaccttctgattttggtttttgatgatgtcc |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25564294 |
ttttctgtcaccttctgattttggtttttgatgctgtcc |
25564256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 15018428 - 15018293
Alignment:
| Q |
21 |
tattgttctcaataaagcaatactgactacattttcatgtgcctttctgataggttgctgccaattatgttgcaatggttccatctggacaaatatttga |
120 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| | |||| | |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15018428 |
tattgttctcaataaagcaagaccgacttcatttttacgtgcttatctgataggtggctgctaattatgttgcaatggttccatcttgacaaatatttga |
15018329 |
T |
|
| Q |
121 |
taggtatccgccaattacaaagttctatcactcttt |
156 |
Q |
| |
|
||||||||| ||||||||||| |||| ||| ||||| |
|
|
| T |
15018328 |
taggtatccaccaattacaaatttctgtcaatcttt |
15018293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University