View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_low_14 (Length: 432)
Name: NF5474_low_14
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 43292208 - 43291810
Alignment:
| Q |
18 |
atgtataacttccgtttcatgaattggaggtgaaagtatcatcaaatttgtaagtaaccaattgcactattgtaatatacatggattgattgttttgtta |
117 |
Q |
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| T |
43292208 |
atgtataacttccgtttcatgaattggaggtgaaagtatcatcaaatttgtaagtaaccaattgcactatggtaatatacatggattgattgttttgtta |
43292109 |
T |
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| Q |
118 |
acaaattacaaactgtttcaaatgaatgaaaaccccgagtaagagtttcaaaccagcagctgttgtggtgtacaaagaataaatttatgcaggtcatgaa |
217 |
Q |
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| T |
43292108 |
acaaattacaaactgtttcaaatgaatgaaaaccccgagtaagagtttcaaaccagcagctgttgtggtgtacaaagaataaatttatgcaggtcatgaa |
43292009 |
T |
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| Q |
218 |
actattatcagttataatagatcctgtgaggctgtgactatcttaacgatgagcctagctcactttcgtgacaactgtctactacaaagaaaccaacaaa |
317 |
Q |
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| T |
43292008 |
actattatcagttataatagatcttgtgaggctgtgactatcttaacgatgagcctagctcactttcgtgacaactgtctactacaaagaaaccaacaca |
43291909 |
T |
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| Q |
318 |
tctcgaaataacttgtgataattattcaattcattcattcgaatccaaaatcatatttaaatttaagctatcttggggcttataccctgcatacttcat |
416 |
Q |
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| T |
43291908 |
tctcgaaataacttgtgataattattcaattcattcatccgaatccaaaatcgtatttaaatttaagctatattgtggcttataccctgcatacttcat |
43291810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 43308868 - 43308831
Alignment:
| Q |
330 |
ttgtgataattattcaattcattcattcgaatccaaaa |
367 |
Q |
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| T |
43308868 |
ttgtgataattattcaattcattcatcagaatccaaaa |
43308831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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