View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5474_low_18 (Length: 369)

Name: NF5474_low_18
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5474_low_18
NF5474_low_18
[»] chr7 (30 HSPs)
chr7 (199-355)||(41508111-41508267)
chr7 (197-355)||(12485287-12485445)
chr7 (197-355)||(12506719-12506877)
chr7 (195-355)||(20949084-20949243)
chr7 (197-355)||(7307451-7307610)
chr7 (232-355)||(46341508-46341631)
chr7 (214-356)||(6549065-6549207)
chr7 (192-334)||(34470090-34470232)
chr7 (200-355)||(37048586-37048746)
chr7 (214-297)||(2122418-2122501)
chr7 (199-269)||(45072499-45072569)
chr7 (274-355)||(46101268-46101349)
chr7 (215-315)||(10599747-10599847)
chr7 (197-322)||(14568401-14568526)
chr7 (278-355)||(508474-508550)
chr7 (211-342)||(14658767-14658898)
chr7 (208-299)||(15033294-15033385)
chr7 (197-251)||(20032522-20032576)
chr7 (199-235)||(508601-508637)
chr7 (307-355)||(2195816-2195864)
chr7 (210-342)||(18145799-18145931)
chr7 (199-269)||(47682585-47682656)
chr7 (214-267)||(10409792-10409845)
chr7 (224-300)||(13777705-13777782)
chr7 (197-298)||(18117334-18117433)
chr7 (197-238)||(20043637-20043678)
chr7 (276-321)||(35333328-35333373)
chr7 (192-245)||(46101148-46101201)
chr7 (209-257)||(17757376-17757424)
chr7 (312-356)||(43051455-43051499)
[»] chr8 (30 HSPs)
chr8 (190-355)||(2152332-2152497)
chr8 (192-355)||(8251247-8251410)
chr8 (191-355)||(2207782-2207945)
chr8 (41-162)||(2152532-2152654)
chr8 (201-355)||(16890251-16890408)
chr8 (192-355)||(31658864-31659026)
chr8 (194-355)||(1445364-1445525)
chr8 (192-355)||(2520107-2520268)
chr8 (224-355)||(36054827-36054958)
chr8 (214-349)||(38209515-38209650)
chr8 (231-356)||(29916975-29917099)
chr8 (210-292)||(30653623-30653705)
chr8 (220-343)||(30870743-30870865)
chr8 (277-355)||(40694243-40694321)
chr8 (278-355)||(30112485-30112562)
chr8 (214-299)||(36408181-36408266)
chr8 (211-349)||(11778055-11778196)
chr8 (274-355)||(40696613-40696693)
chr8 (242-349)||(6396451-6396558)
chr8 (195-344)||(16878754-16878903)
chr8 (210-291)||(21504772-21504854)
chr8 (200-269)||(40314312-40314381)
chr8 (233-313)||(5923871-5923951)
chr8 (226-286)||(11595709-11595770)
chr8 (213-324)||(43698929-43699038)
chr8 (243-355)||(43836945-43837057)
chr8 (210-297)||(2606539-2606626)
chr8 (275-314)||(4641095-4641134)
chr8 (209-250)||(43594405-43594446)
chr8 (304-348)||(11388087-11388131)
[»] chr6 (19 HSPs)
chr6 (192-355)||(180351-180514)
chr6 (192-353)||(34837124-34837285)
chr6 (198-355)||(7926816-7926973)
chr6 (197-355)||(606596-606754)
chr6 (226-322)||(6657922-6658018)
chr6 (197-267)||(12143698-12143768)
chr6 (197-356)||(1856761-1856919)
chr6 (214-356)||(9425502-9425644)
chr6 (275-356)||(6454433-6454513)
chr6 (197-322)||(19780275-19780400)
chr6 (196-300)||(2950132-2950234)
chr6 (208-356)||(13326447-13326593)
chr6 (197-300)||(5428768-5428871)
chr6 (294-356)||(12144075-12144137)
chr6 (211-269)||(31116418-31116476)
chr6 (197-251)||(6454343-6454398)
chr6 (211-269)||(31117343-31117401)
chr6 (216-257)||(2926422-2926463)
chr6 (197-269)||(2443884-2443956)
[»] chr2 (30 HSPs)
chr2 (199-355)||(3268809-3268965)
chr2 (199-355)||(3269368-3269524)
chr2 (199-355)||(3269927-3270083)
chr2 (197-355)||(38496484-38496642)
chr2 (197-355)||(40503886-40504044)
chr2 (211-349)||(38214130-38214268)
chr2 (197-355)||(40442729-40442887)
chr2 (211-349)||(39063587-39063725)
chr2 (211-349)||(19285897-19286035)
chr2 (208-322)||(32872385-32872499)
chr2 (192-355)||(40664245-40664409)
chr2 (197-322)||(16781305-16781430)
chr2 (214-329)||(14200363-14200478)
chr2 (197-322)||(4015767-4015892)
chr2 (214-344)||(31404967-31405097)
chr2 (197-343)||(21229516-21229652)
chr2 (211-288)||(21794914-21794992)
chr2 (213-354)||(31365036-31365177)
chr2 (214-349)||(7011112-7011243)
chr2 (274-347)||(28650250-28650323)
chr2 (197-257)||(2761620-2761682)
chr2 (210-355)||(18423318-18423463)
chr2 (274-322)||(34262753-34262801)
chr2 (208-268)||(34309310-34309370)
chr2 (275-321)||(17368928-17368974)
chr2 (211-258)||(13027910-13027957)
chr2 (282-356)||(16268374-16268448)
chr2 (231-268)||(44883181-44883218)
chr2 (192-252)||(37201448-37201508)
chr2 (214-302)||(44173635-44173723)
[»] chr4 (22 HSPs)
chr4 (192-349)||(31707326-31707480)
chr4 (197-355)||(18838763-18838921)
chr4 (216-350)||(42312399-42312540)
chr4 (208-342)||(25376834-25376968)
chr4 (197-322)||(47231552-47231675)
chr4 (208-355)||(30615130-30615274)
chr4 (208-355)||(16572263-16572407)
chr4 (225-321)||(25382395-25382491)
chr4 (208-355)||(27032149-27032295)
chr4 (210-355)||(33721603-33721752)
chr4 (192-269)||(32599733-32599809)
chr4 (275-356)||(56093601-56093682)
chr4 (278-343)||(44884411-44884475)
chr4 (235-355)||(34319563-34319682)
chr4 (192-270)||(44720556-44720634)
chr4 (211-288)||(4960533-4960610)
chr4 (216-355)||(21128107-21128246)
chr4 (225-291)||(42183535-42183602)
chr4 (210-345)||(2632404-2632541)
chr4 (279-347)||(4960275-4960343)
chr4 (283-342)||(38216018-38216077)
chr4 (197-269)||(27184255-27184327)
[»] chr5 (22 HSPs)
chr5 (199-355)||(18705010-18705166)
chr5 (197-355)||(6688798-6688958)
chr5 (199-355)||(3629190-3629346)
chr5 (224-331)||(7735789-7735896)
chr5 (210-346)||(11691051-11691185)
chr5 (199-322)||(2225624-2225747)
chr5 (209-342)||(11983573-11983705)
chr5 (235-355)||(10705035-10705154)
chr5 (224-356)||(19296165-19296295)
chr5 (214-355)||(4449448-4449589)
chr5 (274-355)||(3257265-3257346)
chr5 (197-302)||(29948046-29948151)
chr5 (214-311)||(14417911-14418008)
chr5 (208-332)||(36482410-36482534)
chr5 (221-354)||(27193023-27193156)
chr5 (212-322)||(14917771-14917877)
chr5 (305-356)||(73576-73627)
chr5 (197-232)||(73647-73682)
chr5 (200-278)||(35547034-35547112)
chr5 (294-355)||(10656485-10656545)
chr5 (311-355)||(17693573-17693617)
chr5 (197-229)||(36477875-36477907)
[»] scaffold0024 (1 HSPs)
scaffold0024 (192-355)||(154351-154514)
[»] chr3 (32 HSPs)
chr3 (197-355)||(40344911-40345067)
chr3 (194-356)||(17003553-17003713)
chr3 (194-355)||(45261375-45261533)
chr3 (211-355)||(8825352-8825494)
chr3 (198-355)||(46918443-46918599)
chr3 (209-355)||(35455319-35455461)
chr3 (210-355)||(43320129-43320268)
chr3 (200-342)||(36659210-36659350)
chr3 (197-355)||(28695553-28695715)
chr3 (208-341)||(30041296-30041429)
chr3 (263-355)||(32211834-32211926)
chr3 (214-356)||(52596622-52596764)
chr3 (248-347)||(25295082-25295181)
chr3 (224-292)||(49983782-49983850)
chr3 (225-356)||(24650131-24650262)
chr3 (214-305)||(43105143-43105234)
chr3 (208-329)||(30577825-30577946)
chr3 (197-288)||(22923709-22923800)
chr3 (197-355)||(47860611-47860756)
chr3 (276-322)||(49983600-49983646)
chr3 (199-329)||(55452469-55452597)
chr3 (212-355)||(41559998-41560135)
chr3 (214-320)||(35104715-35104821)
chr3 (209-267)||(42279227-42279285)
chr3 (275-355)||(25286165-25286246)
chr3 (197-257)||(25286044-25286104)
chr3 (192-264)||(25294832-25294904)
chr3 (215-287)||(48271745-48271817)
chr3 (209-355)||(50452285-50452428)
chr3 (214-257)||(27828555-27828598)
chr3 (290-351)||(21698510-21698571)
chr3 (246-278)||(18084392-18084424)
[»] chr1 (29 HSPs)
chr1 (224-355)||(39150187-39150317)
chr1 (201-356)||(42454854-42455010)
chr1 (203-355)||(9851798-9851949)
chr1 (198-355)||(36437179-36437336)
chr1 (192-355)||(28165099-28165262)
chr1 (208-354)||(31152448-31152591)
chr1 (194-356)||(28469944-28470100)
chr1 (210-355)||(31181043-31181189)
chr1 (214-349)||(17971358-17971493)
chr1 (214-349)||(46443719-46443852)
chr1 (208-286)||(31003574-31003652)
chr1 (208-329)||(28723954-28724075)
chr1 (208-322)||(32715736-32715850)
chr1 (209-355)||(42745555-42745700)
chr1 (210-335)||(2619678-2619804)
chr1 (214-355)||(27442368-27442508)
chr1 (199-355)||(3574737-3574894)
chr1 (205-355)||(11435564-11435707)
chr1 (283-355)||(17988348-17988420)
chr1 (208-258)||(45691591-45691641)
chr1 (199-262)||(25130217-25130280)
chr1 (274-355)||(24547437-24547519)
chr1 (197-251)||(52336850-52336904)
chr1 (211-347)||(948144-948271)
chr1 (277-350)||(25130026-25130099)
chr1 (197-269)||(17988133-17988205)
chr1 (259-322)||(26976612-26976675)
chr1 (309-355)||(34702213-34702259)
chr1 (212-281)||(24547737-24547806)
[»] scaffold0088 (1 HSPs)
scaffold0088 (192-354)||(51285-51447)
[»] scaffold1809 (1 HSPs)
scaffold1809 (197-341)||(476-620)
[»] scaffold0836 (1 HSPs)
scaffold0836 (197-355)||(3033-3191)
[»] scaffold0026 (1 HSPs)
scaffold0026 (274-343)||(68823-68890)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 199 - 355
Target Start/End: Complemental strand, 41508267 - 41508111
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaa 298  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  41508267 attaattagtgtaactttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaatattaaaaagacaaacattaa 41508168  T
Q  299 ataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  41508167 ataaggggtaaaaaagtcttttaagcaataactacaccttaaaaattgtgatatttt 41508111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 12485445 - 12485287
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||| || ||||||||||  || | |||||||| | | |||||    
T  12485445 tcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaacaaacacatt 12485346  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||||||||||||||||| |  |||||||||||||||||| |||| |||||||    
T  12485345 aaataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatatttt 12485287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 12506877 - 12506719
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||| || ||||||||||  || | |||||||| | | |||||    
T  12506877 tcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaacaaacacatt 12506778  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||||||||||||||||| |  |||||||||||||||||| |||| |||||||    
T  12506777 aaataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatatttt 12506719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 195 - 355
Target Start/End: Complemental strand, 20949243 - 20949084
Alignment:
Q  195 attcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaaca 294  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||   |||||||| |||||| | |||    
T  20949243 attcattgattaatgtaactttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagaca 20949144  T
Q  295 ttaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||| ||||||| |||| || |||||| |||||||||||||||||| || ||| |||||    
T  20949143 ttaaat-agggataaaaaaatcatttaagcaataactacaccttaaaagttatgacatttt 20949084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 7307610 - 7307451
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    ||||||||||| ||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||||  | ||||||||||||| |||||| ||    
T  7307610 tcattaattagggtaaccttttgcatatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaacaaacctt 7307511  T
Q  297 aaataaggg--atagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||  ||| |||| ||||||||  ||||||||| | |||||| |||||| |||||    
T  7307510 aaataaggggcata-aaaaatcttttaaacaataactactctttaaaagttgtgacatttt 7307451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 232 - 355
Target Start/End: Complemental strand, 46341631 - 46341508
Alignment:
Q  232 aatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataact 331  Q
    ||||||||||  |||||| |||||||||||||||||||| | ||| ||| ||||| | ||||| |||||||| | |||| |||||||||||| |||||||    
T  46341631 aatataccctcgtaaaaagttgtgaagcattaaatacacccactattatcaaaaacaaaaacaataaataagtggtagagaagtcttttaagcaataact 46341532  T
Q  332 acaccttaaaaattgtgatatttt 355  Q
    ||||||||||| ||||||||||||    
T  46341531 acaccttaaaagttgtgatatttt 46341508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 6549065 - 6549207
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    ||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||  | |||   ||||||||| || |||||| | | ||||| ||||    
T  6549065 tttttgaatatttttactaatataccttaataaaaaattgtgaaacattaaatacatccactatctttaaaaagaaaaccattaagtgaaggataaaaaa 6549164  T
Q  314 gtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
     ||||||||| |||||||| ||||||||| |||||||||||||    
T  6549165 atcttttaagaaataactataccttaaaagttgtgatattttt 6549207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 334
Target Start/End: Complemental strand, 34470232 - 34470090
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    |||| |||||||||| |  |||||||||||||||||||||||||||  |   || |||||||||||  ||||||||||||| ||||||||||||||| ||    
T  34470232 tacaatcattaattaattaaactttttgaatatttttacaaatataaacacttacaaaattgtgaaatattaaatacactcactaatattaaaaagagaa 34470133  T
Q  292 acattaaataagggatagaaaagtcttttaagtaataactaca 334  Q
     |||||||  ||||||| |||| ||||||||||||||| ||||    
T  34470132 gcattaaacgagggataaaaaattcttttaagtaataagtaca 34470090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 37048746 - 37048586
Alignment:
Q  200 ttaattagtgtaactttttgaatatttttacaaatatac---ccttataaaaaattgtgaagcattaaatacactcgctaata---ttaaaaagacaaac 293  Q
    ||||||||||||| ||||||||| ||| ||||||||||    ||| ||||||| | ||||| |||||||||  | | ||||||   ||||||||| ||||    
T  37048746 ttaattagtgtaattttttgaatgtttatacaaatatatgtacctcataaaaattcgtgaaccattaaatatcc-cactaatagtattaaaaagataaac 37048648  T
Q  294 attaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||| || ||||||||||||||||  ||| ||||||| |||||| ||||||||||||    
T  37048647 attaaataaagggtagaaaagtcttttaaacaatcactacactttaaaagttgtgatatttt 37048586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 2122501 - 2122418
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatta 297  Q
    |||||||||||||||||||||| | | |  |||| || ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  2122501 tttttgaatatttttacaaatacagcatcgtaaacaaatgttaagcattaaatacactcactaatattaaaaagacaaacatta 2122418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 45072499 - 45072569
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaataca 269  Q
    |||||||||| ||| |||||||||||||||| |||||||| || |||||||| ||||||||||||||||||    
T  45072499 attaattagtataattttttgaatatttttataaatatactctcataaaaaactgtgaagcattaaataca 45072569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 46101268 - 46101349
Alignment:
Q  274 ctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||||| ||||| |||||||| |||| |||||||||||||| ||||||||||||| ||||||| || ||| |||||    
T  46101268 ctaatattaaaatgacaatcattaaatgaggggtagaaaagtcttttgagtaataactacaacttaaaagttatgacatttt 46101349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 10599747 - 10599847
Alignment:
Q  215 ttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaag 314  Q
    ||||||||  ||||||||||||||||| ||||||  |||||||| |||||||| || | ||| ||||||||||| ||||||||||| | || ||||||||    
T  10599747 ttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaaggttagaaaag 10599846  T
Q  315 t 315  Q
    |    
T  10599847 t 10599847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 14568526 - 14568401
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||| ||| |||||  |||||||| |||||||||||||||| |  || ||| || ||||| ||| |||| || | ||||| || |||||| |||||||    
T  14568526 tcattagttattgtaatattttgaatgtttttacaaatataccgtattataaatttttgaagtattcaatatacccactaattttgaaaagagaaacatt 14568427  T
Q  297 aaataagggatagaaaagtcttttaa 322  Q
    |||| |||| ||||||||||||||||    
T  14568426 aaatgagggttagaaaagtcttttaa 14568401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 508550 - 508474
Alignment:
Q  278 tattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||||||| |||||||||| ||||  ||| | ||||||| ||||||| ||||||||||||||||| |||||    
T  508550 tattaaaaagacaaatattaaataagagatacgaaatt-ttttaagcaataacttcaccttaaaaattgtgaaatttt 508474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 342
Target Start/End: Original strand, 14658767 - 14658898
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggataga 310  Q
    |||||||| ||| |||||||||||||||||| |||||||  | ||||| ||||||||    | ||| ||||||||||| ||||||||||  |||  |  |    
T  14658767 aactttttaaatgtttttacaaatataccctcataaaaacatatgaagtattaaatatttccactagtattaaaaagataaacattaaacgaggattgaa 14658866  T
Q  311 aaagtcttttaagtaataactacaccttaaaa 342  Q
    |||||||||||  || ||| ||||||||||||    
T  14658867 aaagtcttttacatagtaaatacaccttaaaa 14658898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 15033294 - 15033385
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaa 299  Q
    |||| ||||||||||  |||||||||||||| || ||||||| || ||||  ||| |||| |||| |||||||| |||||||||| ||||||    
T  15033294 tgtacctttttgaatgattttacaaatatactctaataaaaatttatgaattattgaatatactcactaatattgaaaagacaaatattaaa 15033385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 20032522 - 20032576
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaat 251  Q
    |||||||||  ||||||||||| |||||||||||||||||||  |||||||||||    
T  20032522 tcattaattgttgtaactttttaaatatttttacaaatatactattataaaaaat 20032576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 508637 - 508601
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaata 235  Q
    |||||||| ||||||||||||||||||||||||||||    
T  508637 attaattattgtaactttttgaatatttttacaaata 508601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 2195864 - 2195816
Alignment:
Q  307 tagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||||||||  |||||||||||||||||| || |||||||||    
T  2195864 tagaaaagtcttttaaacaataactacaccttaaaagttatgatatttt 2195816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 342
Target Start/End: Complemental strand, 18145931 - 18145799
Alignment:
Q  210 taactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatag 309  Q
    |||||||||  ||| |||||||||||||||| |||| ||| |||| ||  ||||||||||  | |||||||||||| || || |||||||| |    |||    
T  18145931 taactttttatataattttacaaatatacccgtatagaaagttgtaaaatattaaatacatccactaatattaaaatgataatcattaaatgaaaagtag 18145832  T
Q  310 aaaagtcttttaagtaataactacaccttaaaa 342  Q
    |||| ||||||||  ||||| ||||| ||||||    
T  18145831 aaaaatcttttaaacaataattacactttaaaa 18145799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 47682656 - 47682585
Alignment:
Q  199 attaattagtgtaactttttgaatatttttaca-aatatacccttataaaaaattgtgaagcattaaataca 269  Q
    |||||||||| ||| ||||| ||||||| ||   |||||||  |||||||||||||||||||||||||||||    
T  47682656 attaattagtctaatttttttaatatttataagtaatatacatttataaaaaattgtgaagcattaaataca 47682585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 10409845 - 10409792
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaata 267  Q
    ||||||||| |||||| |||||||||||  |||||| |||||||| ||||||||    
T  10409845 tttttgaatgtttttataaatataccctcttaaaaatttgtgaagtattaaata 10409792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 13777782 - 13777705
Alignment:
Q  224 tttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaata-ttaaaaagacaaacattaaat 300  Q
    |||||| ||||||||  | ||||||| |||||||| |||||||| |||  |||||| ||||||||||||| |||||||    
T  13777782 tttttataaatatacgttcataaaaatttgtgaagtattaaatatacttactaatacttaaaaagacaaatattaaat 13777705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 18117433 - 18117334
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||| |||||||||||  ||| ||||| ||||||||  ||||| |||||||||||  |||||||||| |  |||||||||||| || || ||||    
T  18117433 tcattaattattgtaactttttatata-ttttataaatatacttttatagaaaattgtgaa-aattaaatacatttactaatattaaaatgataatcatt 18117336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 20043637 - 20043678
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatac 238  Q
    |||||||||  ||||||||||| |||||||||||||||||||    
T  20043637 tcattaattgttgtaactttttaaatatttttacaaatatac 20043678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 35333373 - 35333328
Alignment:
Q  276 aatattaaaaagacaaacattaaataagggatagaaaagtctttta 321  Q
    ||||||||||||||||||||||||| |||| || |||| |||||||    
T  35333373 aatattaaaaagacaaacattaaatgagggttaaaaaaatctttta 35333328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 46101148 - 46101201
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttata 245  Q
    |||| |||||||||  ||||  ||||| ||||||||||||||||||||||||||    
T  46101148 tacaatcattaattgttgtagttttttaaatatttttacaaatatacccttata 46101201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 17757376 - 17757424
Alignment:
Q  209 gtaactttttgaatatttttacaaatatacccttataaaaaattgtgaa 257  Q
    |||||||||| ||| |||||||||||||| | | |||||||||||||||    
T  17757376 gtaacttttttaatgtttttacaaatatatcttcataaaaaattgtgaa 17757424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 43051499 - 43051455
Alignment:
Q  312 aagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    |||||||| ||  ||||||||||||||||||||||||| ||||||    
T  43051499 aagtctttgaatcaataactacaccttaaaaattgtgacattttt 43051455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 190 - 355
Target Start/End: Complemental strand, 2152497 - 2152332
Alignment:
Q  190 cttacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatatta-aaaaga 288  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  2152497 cttacgttcattagttagtgtaactttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaaga 2152398  T
Q  289 caaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
     |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2152397 taaacattaaataaggggtagaaaagtcttttaagtaataac-acaccttaaaaattgtgatatttt 2152332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 192 - 355
Target Start/End: Complemental strand, 8251410 - 8251247
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  8251410 tacactcattaattagtgtagttttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataaactcactaatattaaaaagacaa 8251311  T
Q  292 acattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
     |||||||||| ||  | ||| |||||||||| ||||| |||||||||||| ||||||||||||    
T  8251310 ccattaaataatggggaaaaaggtcttttaagcaataattacaccttaaaagttgtgatatttt 8251247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 191 - 355
Target Start/End: Complemental strand, 2207945 - 2207782
Alignment:
Q  191 ttacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagaca 290  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |  |||||||||||| |||    
T  2207945 ttacactcattatttagtgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaagcattaaatacacccattaatattaaaaataca 2207847  T
Q  291 aacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||||||| ||||||| ||||| | | ||||||| || ||||||||||||||||||||    
T  2207846 aacattaaataaggggtagaaaattctttaacgcaataactgcatcttaaaaattgtgatatttt 2207782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 2152654 - 2152532
Alignment:
Q  41 ttgggaagtggacatttgtttgatttggtgcaattgttactttaatcgctccacgttcttgcactattaataaatattagt-aaaggctttttctaggtg 139  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  2152654 ttgggaagtggacatttgttggatttggtgcaattgttactttaatcactccatgttcttgcactattaataaatattagtaaaaggctttttctaggtg 2152555  T
Q  140 ctattaagatactccctcgcgtt 162  Q
     ||||||||||||||||||||||    
T  2152554 ttattaagatactccctcgcgtt 2152532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 16890251 - 16890408
Alignment:
Q  201 taattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatat---taaaaagacaaacatta 297  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||   |||||| ||||||| ||    
T  16890251 taattaatgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatatttataaaaaaacaaacaata 16890350  T
Q  298 aataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||| || ||||||||||||| ||  | |||||| ||||||||| ||||||||||||    
T  16890351 aataaagggtagaaaagtctttgaaacactaactataccttaaaagttgtgatatttt 16890408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 192 - 355
Target Start/End: Complemental strand, 31659026 - 31658864
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||| ||| ||||||| || || |||||||||||||  | ||| ||||||||||||||    
T  31659026 tacactcattaattagtataattttttgaatatttttacaaatatatcctcataaaaa-ttatgcagcattaaatacatccactagtattaaaaagacaa 31658928  T
Q  292 acattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||| || || |||||||||||||  |||||||||| ||||||| ||||||||||||    
T  31658927 acattaaataaaggttaaaaaagtcttttaaacaataactacatcttaaaagttgtgatatttt 31658864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 194 - 355
Target Start/End: Complemental strand, 1445525 - 1445364
Alignment:
Q  194 cattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaac 293  Q
    |||||||| |||| ||||| |||||||||| ||||||||||||||| | || |||||||||||| |||||||||||||| |||||||  |||||| ||||    
T  1445525 cattcattgattaatgtaattttttgaatacttttacaaatataccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaac 1445426  T
Q  294 attaaataagggatagaaaagtcttttaagtaataac-tacaccttaaaaattgtgatatttt 355  Q
    ||||||| ||||||||||||||| |||||| |||||| |||||||||||| |||||| |||||    
T  1445425 attaaat-agggatagaaaagtcatttaagcaataacttacaccttaaaagttgtgacatttt 1445364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 355
Target Start/End: Original strand, 2520107 - 2520268
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||  ||||||| |||| |  |    
T  2520107 tacattcattaattaatgtaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatactctcaataatatttaaaaaagga 2520206  T
Q  292 acattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||  | | ||| ||||||| ||||| |||||||||| ||||||| |||||| |||||    
T  2520207 acattaaat-ggaggtag-aaagtctcttaagcaataactacatcttaaaatttgtgacatttt 2520268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 224 - 355
Target Start/End: Complemental strand, 36054958 - 36054827
Alignment:
Q  224 tttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaag 323  Q
    |||||| |||||||||||||| |||||||| |||| ||||||||||  | ||||||||||||||||||||||||| |||||| || |||||||||||||     
T  36054958 tttttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaa 36054859  T
Q  324 taataactacaccttaaaaattgtgatatttt 355  Q
     ||||| || ||||||||| |||||| |||||    
T  36054858 caataaatataccttaaaagttgtgacatttt 36054827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 349
Target Start/End: Original strand, 38209515 - 38209650
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    ||||| |||||||||| |||||||||||| |||||| |||||||| ||| |||| || | |||||||| ||||||| |||||||||| |||| |||| ||    
T  38209515 tttttaaatatttttataaatatacccttttaaaaatttgtgaagtatttaatatacccactaatattgaaaagaccaacattaaatgagggttagagaa 38209614  T
Q  314 gtcttttaagtaataactacaccttaaaaattgtga 349  Q
    |||||||||  ||||| |  ||||||||| ||||||    
T  38209615 gtcttttaaacaataaatgtaccttaaaagttgtga 38209650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 29917099 - 29916975
Alignment:
Q  231 aaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataac 330  Q
    ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| | ||  ||||||| || |||||||| || |||||||||||||     
T  29917099 aaatataccctta-aaaaaactgtgaagcattaaatacactcactaatattaaaaaaagaagtattaaatgagagatagaaatgttttttaagtaataat 29917001  T
Q  331 tacaccttaaaaattgtgatattttt 356  Q
    ||||  |||||| |||| | ||||||    
T  29917000 tacattttaaaagttgtaacattttt 29916975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 30653623 - 30653705
Alignment:
Q  210 taactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaa 292  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||   ||| |||||||||||||||    
T  30653623 taactttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacacaaactagtattaaaaagacaaa 30653705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 343
Target Start/End: Original strand, 30870743 - 30870865
Alignment:
Q  220 aatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttt 319  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||| |  | |||||||||||| |||||||| | |||   ||||| ||||| | ||    
T  30870743 aatattttgacaaatatacccttataaaaaattgtgaaacattaaatatatccactaatattaaaatgacaaacaat-aatggtggataaaaaagccatt 30870841  T
Q  320 taagtaataactacaccttaaaaa 343  Q
    ||  ||| ||||||||||||||||    
T  30870842 tagataaaaactacaccttaaaaa 30870865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 40694321 - 40694243
Alignment:
Q  277 atattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||| |||||||| || ||||||| ||||||||||||||||| ||||| ||||||| |||| ||||||||||||    
T  40694321 atattaaaatgacaaacactatataaggggtagaaaagtcttttaagcaataattacacctaaaaagttgtgatatttt 40694243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 30112485 - 30112562
Alignment:
Q  278 tattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||||| ||||||||  ||||||| |||| ||||||||| |||||||||||||||||| |||||| |||||    
T  30112485 tattaaaaagacatacattaaacgagggataaaaaaatcttttaagcaataactacaccttaaaatttgtgacatttt 30112562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 36408181 - 36408266
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaa 299  Q
    ||||||||| |||||||||||||||||| ||||||| |||| ||| ||||| || |  | ||||||||||||||||||||||||||    
T  36408181 tttttgaatgtttttacaaatataccctcataaaaatttgttaagtattaattatatccactaatattaaaaagacaaacattaaa 36408266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 349
Target Start/End: Complemental strand, 11778196 - 11778055
Alignment:
Q  211 aactttttgaatatttttacaaatatac---ccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    |||||||||||| |||||| ||||||||   |||||||  || ||| |||  |||||||| | |   ||||||||||||||||||||||||||||||| |    
T  11778196 aactttttgaatttttttataaatatacggcccttataggaatttgagaaatattaaatatatttattaatattaaaaagacaaacattaaataagggtt 11778097  T
Q  308 agaaaagtcttttaagtaataactacaccttaaaaattgtga 349  Q
    |  ||||||||||| | ||||  |||| ||||||||||||||    
T  11778096 aagaaagtcttttacgaaatagatacatcttaaaaattgtga 11778055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 40696613 - 40696693
Alignment:
Q  274 ctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||| |||| || |||| ||||||||||||    
T  40696613 ctaatattaaaatgacaaacactatataaggg-tagaaaagtcttttaaggaataattacatctaaaaagttgtgatatttt 40696693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 349
Target Start/End: Original strand, 6396451 - 6396558
Alignment:
Q  242 tataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaa 341  Q
    ||||||||  |||||| |||||||||||||| || |||||||||||||||   |||||||||||||| |||| | ||| || ||| |||| || ||||||    
T  6396451 tataaaaatctgtgaaacattaaatacactcactgatattaaaaagacaattgttaaataagggataaaaaaatgtttaaaataacaacttcaacttaaa 6396550  T
Q  342 aattgtga 349  Q
    | ||||||    
T  6396551 agttgtga 6396558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 344
Target Start/End: Original strand, 16878754 - 16878903
Alignment:
Q  195 attcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtg-aagcattaaatacactcgctaatattaaaaagacaaac 293  Q
    ||||||||||||  |||||||||  |||| |||||||| ||||| || ||||||||| ||| ||  |||||||| | ||  ||||||||||| ||   ||    
T  16878754 attcattaattatcgtaacttttgaaatacttttacaagtatactctcataaaaaatagtgaaaaaattaaatataatcattaatattaaaatgatggac 16878853  T
Q  294 attaaataagggatagaaaagtcttttaagtaataactacaccttaaaaat 344  Q
    ||||||| |  |||||||||||| |||||  ||||||||||||||||||||    
T  16878854 attaaatgatagatagaaaagtc-tttaaacaataactacaccttaaaaat 16878903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 21504772 - 21504854
Alignment:
Q  210 taactttttgaatatttttacaaatataccc-ttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    ||||||||||||| |||||||| |||||||| ||||  ||||||||||  |||||||| ||| || |||||||||||||||||    
T  21504772 taactttttgaatgtttttacacatataccccttatggaaaattgtgagacattaaatgcacccggtaatattaaaaagacaa 21504854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 40314381 - 40314312
Alignment:
Q  200 ttaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaataca 269  Q
    ||||||| |||||| |||| |||||||||||||||||| | | |||||||||| |||| |||||||||||    
T  40314381 ttaattaatgtaaccttttaaatatttttacaaatatatcttcataaaaaattatgaaacattaaataca 40314312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 5923951 - 5923871
Alignment:
Q  233 atatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    |||| |||| ||||||| |||| ||| ||||| || || | ||||||||||||||||||||||||||| |||| |||||||    
T  5923951 atatgccctcataaaaatttgtaaagtattaattatacacactaatattaaaaagacaaacattaaatgagggttagaaaa 5923871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 11595770 - 11595709
Alignment:
Q  226 tttacaaatatacccttataaaaaa-ttgtgaagcattaaatacactcgctaatattaaaaa 286  Q
    |||||||||||||| || ||||||| |||||| |||||| |||||||| |||||||||||||    
T  11595770 tttacaaatataccgttgtaaaaaaattgtgatgcattatatacactcactaatattaaaaa 11595709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 324
Target Start/End: Original strand, 43698929 - 43699038
Alignment:
Q  213 ctttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaa 312  Q
    |||||||||| ||||||| ||||||| |||| |||   |||||||| |||||| ||| ||  ||||||||||| || |||| |||||  |||  ||||||    
T  43698929 ctttttgaatttttttacgaatatacacttagaaat--ttgtgaagtattaaaaacattcaataatattaaaatgataaacgttaaaccaggattagaaa 43699026  T
Q  313 agtcttttaagt 324  Q
    ||||||||||||    
T  43699027 agtcttttaagt 43699038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 355
Target Start/End: Complemental strand, 43837057 - 43836945
Alignment:
Q  243 ataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaa 342  Q
    ||||||| || ||||||||||||||||     |||||| ||||| | |||||| ||| | |||  |||||| ||||||| ||| ||| ||||||||||||    
T  43837057 ataaaaagttatgaagcattaaatacatctattaatataaaaaacaaaaacataaaaaatggggcagaaaaatcttttacgtactaattacaccttaaaa 43836958  T
Q  343 attgtgatatttt 355  Q
    ||||| |||||||    
T  43836957 attgtaatatttt 43836945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 2606626 - 2606539
Alignment:
Q  210 taactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatta 297  Q
    ||||||||||||| ||||||||  || |||||| |  |||||||||||   | | || ||||||||||||||||||||| ||||||||    
T  2606626 taactttttgaatgtttttacatgtacacccttgtggaaaattgtgaaatgtgagatgcactcgctaatattaaaaagagaaacatta 2606539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 4641134 - 4641095
Alignment:
Q  275 taatattaaaaagacaaacattaaataagggatagaaaag 314  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  4641134 taatattaaaaagacaaacattaaatgagggttagaaaag 4641095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 43594405 - 43594446
Alignment:
Q  209 gtaactttttgaatatttttacaaatatacccttataaaaaa 250  Q
    |||||||||| ||||||||||| |||||||||| ||||||||    
T  43594405 gtaactttttaaatatttttactaatataccctcataaaaaa 43594446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 11388087 - 11388131
Alignment:
Q  304 ggatagaaaagtcttttaagtaataactacaccttaaaaattgtg 348  Q
    |||||||||| |||||||  ||||||||||| |||||||||||||    
T  11388087 ggatagaaaaatcttttatataataactacaacttaaaaattgtg 11388131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 192 - 355
Target Start/End: Complemental strand, 180514 - 180351
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcg-ctaatattaaaaagaca 290  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||    
T  180514 tacactcattaattagtgtaactttttgaatatgtttacaaatatacccttataaaaaattttgaagcgttaaataca-tcgactaatattaaaaagaca 180416  T
Q  291 aacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||    
T  180415 aacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatatttt 180351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 192 - 353
Target Start/End: Original strand, 34837124 - 34837285
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||  |  |||||||||||||||||    
T  34837124 tacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatattaaaaagacaa 34837223  T
Q  292 acattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatt 353  Q
     ||||||||||||| || |||||||||||||  |||| ||||||||||||| ||| ||||||    
T  34837224 gcattaaataaggggtaaaaaagtcttttaaacaatagctacaccttaaaagttgcgatatt 34837285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 198 - 355
Target Start/End: Complemental strand, 7926973 - 7926816
Alignment:
Q  198 cattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatta 297  Q
    ||||||||||| ||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||  ||||    
T  7926973 cattaattagtataactttttgaataagattacaaatataccctcataaaaaattgtgaagcattaaatacactctttaatattaaaaagacaactatta 7926874  T
Q  298 aataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||| || | |||| || |||  ||||| ||||| |||||| ||||||||||||    
T  7926873 aataaggggtatataagttttctaaaaaataattacactttaaaagttgtgatatttt 7926816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 606596 - 606754
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||  ||||||||||| || ||||||||||||||||||||||| ||  ||||||| |||||||||||  | ||||||||||||| |||  ||||    
T  606596 tcattaattgttgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaatacagtcatt 606695  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||||  |||||| |||||||  |||| |||||||||||| |||||| |||||    
T  606696 aaataagggattaaaaagtattttaagctataagtacaccttaaaagttgtgacatttt 606754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 6658018 - 6657922
Alignment:
Q  226 tttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaa 322  Q
    |||||||||||||||| ||||||| |||||||| |||||||| || | ||||||||||||||||||||||||||| |||| |||||||||| |||||    
T  6658018 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgagggttagaaaagtcatttaa 6657922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 12143698 - 12143768
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaata 267  Q
    |||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  12143698 tcattaattaatgtaactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaata 12143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 356
Target Start/End: Complemental strand, 1856919 - 1856761
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||| ||||| ||||| ||||||||||||||||||| || ||| ||||| || || ||||||||||   |  |||||||||||||| ||| |||    
T  1856919 tcattaattaatgtaattttttaaatatttttacaaatatactctcatacaaaat-gtaaaacattaaatacttccattaatattaaaaagagaaatatt 1856821  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    |||| || ||||||||||||||||||  |||||||    ||||||| |||||||||||||    
T  1856820 aaatgagagatagaaaagtcttttaaacaataactgatacttaaaagttgtgatattttt 1856761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 356
Target Start/End: Complemental strand, 9425644 - 9425502
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    ||||||||| ||||||||||||||| || ||||||   ||||||| |||||||| | || ||| ||| ||||||| ||||||||||| |||  || ||||    
T  9425644 tttttgaatgtttttacaaatatactctcataaaattctgtgaagtattaaatatattcactattatgaaaaagataaacattaaatgaggattaaaaaa 9425545  T
Q  314 gtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    |||||||||  ||||| || |||| |||| ||||||| |||||    
T  9425544 gtcttttaaacaataaatatacctcaaaagttgtgattttttt 9425502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 6454433 - 6454513
Alignment:
Q  275 taatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    |||||||| ||| |||||||||||||||||| || |||||||||||||||||||| |||| || |||| |||||||||||||    
T  6454433 taatattataaatacaaacattaaataaggg-taaaaaagtcttttaagtaataattacatctaaaaagttgtgatattttt 6454513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 19780400 - 19780275
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||| ||| ||||| ||||| ||| ||||||||||||||||    || ||| |||||||| |||||||| || | ||||| || |||||| |||||||    
T  19780400 tcattagttattgtaatttttttaatgtttttacaaatataccgcattataaatttgtgaagtattaaatatacccactaattttgaaaagagaaacatt 19780301  T
Q  297 aaataagggatagaaaagtcttttaa 322  Q
    |||| |||| ||||||||||||||||    
T  19780300 aaatgagggttagaaaagtcttttaa 19780275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 2950132 - 2950234
Alignment:
Q  196 ttcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacat 295  Q
    ||||||||||| ||||| |||||||||||||||||||||||| ||| || |||||||||||| |||| |||| || | ||||||| ||||| | ||||||    
T  2950132 ttcattaattaatgtaattttttgaatatttttacaaatatatcctgat-aaaaattgtgaaacatt-aatatacccactaatatgaaaaatataaacat 2950229  T
Q  296 taaat 300  Q
    |||||    
T  2950230 taaat 2950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 356
Target Start/End: Original strand, 13326447 - 13326593
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||| |||| |||||| | ||||| ||||| |||||| ||| ||||||| |||| |||||| |   |||||||||||| |  || |||| || || |||    
T  13326447 tgtaatttttagaatatctctacaattatacgcttatagaaa-ttgtgaaacattgaatacatttcttaatattaaaaaaagtaaaattacatgagagat 13326545  T
Q  308 agaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    | ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  13326546 ataaaagtcttttaa-taataactacaccttaaaaattgtgattttttt 13326593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 300
Target Start/End: Complemental strand, 5428871 - 5428768
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||  ||||| ||||| ||||||||||||||||||| ||| || ||| || |||| |||| ||| || || ||||||||||||||| || ||||    
T  5428871 tcattaattgttgtaattttttaaatatttttacaaatatactcttgtagaaagttatgaaacattgaatgcattcactaatattaaaaagataatcatt 5428772  T
Q  297 aaat 300  Q
    ||||    
T  5428771 aaat 5428768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 12144075 - 12144137
Alignment:
Q  294 attaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    ||||||||| || || ||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  12144075 attaaataaagggtataaaagtcttttaaataataattacaccttaaaaattgtgacattttt 12144137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 31116476 - 31116418
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaataca 269  Q
    |||||||||||||| |||||||||||||||||||| | ||||||||| |||| ||||||    
T  31116476 aactttttgaatatgtttacaaatatacccttatagagaattgtgaaacattcaataca 31116418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 6454343 - 6454398
Alignment:
Q  197 tcattaattagtgtaactttt-tgaatatttttacaaatatacccttataaaaaat 251  Q
    |||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||    
T  6454343 tcattaattagtgtaatttttttgaatatttttagaaatatacctttataaaaaat 6454398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 31117401 - 31117343
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaataca 269  Q
    |||||||||||||| |||||||||||||| ||||| | ||||||||| |||| ||||||    
T  31117401 aactttttgaatatgtttacaaatatacctttatagagaattgtgaaacattcaataca 31117343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 2926422 - 2926463
Alignment:
Q  216 tttgaatatttttacaaatatacccttataaaaaattgtgaa 257  Q
    |||||||||||||||||||||||  || ||||||||||||||    
T  2926422 tttgaatatttttacaaatatacttttctaaaaaattgtgaa 2926463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 2443956 - 2443884
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaataca 269  Q
    |||||||||| |  |||||||||||||| |||| ||||| ||| | || |||| |||||||| ||||||||||    
T  2443956 tcattaattaatccaactttttgaatatctttaaaaataaaccatcattaaaatttgtgaagtattaaataca 2443884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 199 - 355
Target Start/End: Complemental strand, 3268965 - 3268809
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaa 298  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    |||||||||||| | |||||||||    
T  3268965 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3268866  T
Q  299 ataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  3268865 ataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatatttt 3268809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 199 - 355
Target Start/End: Complemental strand, 3269524 - 3269368
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaa 298  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    |||||||||||| | |||||||||    
T  3269524 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3269425  T
Q  299 ataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  3269424 ataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatatttt 3269368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 199 - 355
Target Start/End: Complemental strand, 3270083 - 3269927
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaa 298  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    |||||||||||| | |||||||||    
T  3270083 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3269984  T
Q  299 ataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  3269983 ataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatatttt 3269927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 38496642 - 38496484
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||  || ||| ||||||||||||   ||||||||||||| |||||| ||    
T  38496642 tcattaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatacacctactaatattaaaaatacaaacgtt 38496543  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||| |||||| |||||||||  |||||||| |||||||||||| ||| |||||    
T  38496542 aaataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacatttt 38496484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 40504044 - 40503886
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||   ||||||||||||||||||||| |    
T  40504044 tcattaattagtgtaatcttttgaatatttttacagatataccctcataaaaagttgtgaagcattaaatgcacctactaatattaaaaagacaaacaat 40503945  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||| || |||||| ||||||  ||||| |||||||||||| |||||| |||||    
T  40503944 aaataaggggtataaaagttttttaaacaataattacaccttaaaagttgtgacatttt 40503886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 211 - 349
Target Start/End: Complemental strand, 38214268 - 38214130
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggataga 310  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||   ||||||||||||||| ||  ||||||| ||||||| |    
T  38214268 aactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatacacatactaatattaaaaagagaagtattaaatgagggatata 38214169  T
Q  311 aaagtcttttaagtaataactacaccttaaaaattgtga 349  Q
    ||||||||||||  ||||| |||||||||||| ||||||    
T  38214168 aaagtcttttaaacaataaatacaccttaaaagttgtga 38214130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 40442887 - 40442729
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||||| |||  ||||||||||||||| | ||||||||||||||||| |||||||||||||||| |||   ||||||||||||||| ||||| |    
T  40442887 tcattaattagtataatcttttgaatatttttatagatatacccttataaaaagttgtgaagcattaaatgcacctactaatattaaaaagataaacaat 40442788  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||| || |||||| ||||||  ||||| |||||||||||| |||||| |||||    
T  40442787 aaataaggggtataaaagttttttaaacaataattacaccttaaaagttgtgacatttt 40442729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 349
Target Start/End: Original strand, 39063587 - 39063725
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggataga 310  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| | ||||||||||||||| ||  ||||||| ||  ||| |    
T  39063587 aactttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacactaatattaaaaagagaagtattaaatgagcaatata 39063686  T
Q  311 aaagtcttttaagtaataactacaccttaaaaattgtga 349  Q
    ||||||||||||  ||||| |||||||||||| ||||||    
T  39063687 aaagtcttttaaacaataaatacaccttaaaagttgtga 39063725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 211 - 349
Target Start/End: Complemental strand, 19286035 - 19285897
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggataga 310  Q
    |||||||| |||| ||||||||||||| || |||| ||| ||||||| ||||||||||| || |||||||| |||||||||| ||||||| | ||||| |    
T  19286035 aactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattgaaaagacaaatattaaatgaaggatata 19285936  T
Q  311 aaagtcttttaagtaataactacaccttaaaaattgtga 349  Q
    ||||||||||| | |||||||||||||||||| ||||||    
T  19285935 aaagtcttttatgcaataactacaccttaaaacttgtga 19285897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 32872499 - 32872385
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||| || | |||||||||||| |||||||||||||| |||| |    
T  32872499 tgtaattttttgaatgtttttacaaatataccctcataaaaaattgtgaagtattaaatatacccactaatattaaaaggacaaacattaaattagggtt 32872400  T
Q  308 agaaaagtcttttaa 322  Q
     ||||||||||||||    
T  32872399 ggaaaagtcttttaa 32872385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 192 - 355
Target Start/End: Complemental strand, 40664409 - 40664245
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatatt-aaaaagaca 290  Q
    |||| ||||||||||  | ||||||||||||||| |||||||||||||||  |||||||||||||| |||||||||||| | | ||| || ||||||| |    
T  40664409 tacaatcattaattaaagaaactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatacacacaccaatgttaaaaaagaga 40664310  T
Q  291 aacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    | |||||||| ||||||| ||||||||||||| |||||| ||||| |||| | |||||| |||||    
T  40664309 agcattaaatgagggatataaaagtcttttaaataataaatacactttaagagttgtgaaatttt 40664245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 16781430 - 16781305
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||||| ||| |||||||||| || |||||||||||||| || |||||| ||||| ||||||||||||   ||||||||| |||||||||||||    
T  16781430 tcattaattagtctaattttttgaataattatacaaatataccctcattaaaaatggtgaaacattaaatacacctactaatattacaaagacaaacatt 16781331  T
Q  297 aaataagggatagaaaagtcttttaa 322  Q
    || |||||  ||||||||||||||||    
T  16781330 aactaaggcgtagaaaagtcttttaa 16781305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 214 - 329
Target Start/End: Original strand, 14200363 - 14200478
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||| |||||||| |||| |||||||| ||||||  |||||||||| |||| || ||||    
T  14200363 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattgaaaagatcaacattaaatgagggttaaaaaa 14200462  T
Q  314 gtcttttaagtaataa 329  Q
    ||||||||| ||||||    
T  14200463 gtcttttaaataataa 14200478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 322
Target Start/End: Original strand, 4015767 - 4015892
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||||| |||||||||||||| || || |||||||||||  | ||||||| |||| |||||||| |||   ||||||||| |||||||||||||    
T  4015767 tcattaattagtctaactttttgaataattatataaatataccctcgttaaaaattatgaaacattaaatgcacctactaatattacaaagacaaacatt 4015866  T
Q  297 aaataagggatagaaaagtcttttaa 322  Q
    || |||||| ||||||||||||||||    
T  4015867 aactaaggggtagaaaagtcttttaa 4015892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 344
Target Start/End: Complemental strand, 31405097 - 31404967
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    |||||||||||||||||||||||| ||| ||| ||| || ||||| |||||||| |  | ||||||||||||||||||| ||||||| |||| |||||||    
T  31405097 tttttgaatatttttacaaatatatcctcatagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaatgagggttagaaaa 31404998  T
Q  314 gtcttttaagtaataactacaccttaaaaat 344  Q
    |||||||||  ||||| |  |||||||||||    
T  31404997 gtcttttaaaaaataaatgtaccttaaaaat 31404967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 343
Target Start/End: Complemental strand, 21229652 - 21229516
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||        | |||| | ||||||||||||  |||||||||||||||| | |||    
T  21229652 tcattaattattgtaactttttgaatatttttacaaatatacgcttag-------tttgaaactttaaatacactc--taatattaaaaagacacatatt 21229562  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaa 343  Q
    |||  |||| |||||||||||||||||| ||||||||||||||||||    
T  21229561 aaacgaggggtagaaaagtcttttaagt-ataactacaccttaaaaa 21229516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 21794992 - 21794914
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttat-aaaaaattgtgaagcattaaatacactcgctaatattaaaaaga 288  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| | |||||||||||||||    
T  21794992 aactttttgaatatttttacaaatataccctcataaaaaaattgtgaaacattaaatacacacactaatattaaaaaga 21794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 213 - 354
Target Start/End: Original strand, 31365036 - 31365177
Alignment:
Q  213 ctttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaa 312  Q
    |||||| || |||||||||||||||| |||||| ||  |||||||  ||||||||||  | ||||||||||||| | || | |||||| ||  |||||||    
T  31365036 cttttttaaaatttttacaaatatacacttatagaatgttgtgaaatattaaatacatccactaatattaaaaaaagaacctttaaatgagatatagaaa 31365135  T
Q  313 agtcttttaagtaataactacaccttaaaaattgtgatattt 354  Q
    ||| |||||||| |||||| ||||||||||||||||| ||||    
T  31365136 agttttttaagtcataactccaccttaaaaattgtgacattt 31365177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 349
Target Start/End: Complemental strand, 7011243 - 7011112
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    ||||||||| ||||||||||||||| || ||||||| |||||||| |||||||| || | |||||||| |||||    | ||||||| |||| |||||||    
T  7011243 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatacccactaatattgaaaag----atattaaatgagggttagaaaa 7011148  T
Q  314 gtcttttaagtaataactacaccttaaaaattgtga 349  Q
    |||||||||  ||||| |  | ||||||||||||||    
T  7011147 gtcttttaaacaataaatgtatcttaaaaattgtga 7011112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 28650250 - 28650323
Alignment:
Q  274 ctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgt 347  Q
    ||||||||||||||| || |||||||| |   ||||||||||||||||| ||||||||||||||||||| ||||    
T  28650250 ctaatattaaaaagagaagcattaaattaaatatagaaaagtcttttaaataataactacaccttaaaagttgt 28650323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 2761682 - 2761620
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaa--atatacccttataaaaaattgtgaa 257  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| ||| |||||||||||||||    
T  2761682 tcattaattagtgtaactttttgaatatttttataaatatatatcctcataaaaaattgtgaa 2761620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 355
Target Start/End: Complemental strand, 18423463 - 18423318
Alignment:
Q  210 taactttttgaatattttt--acaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||||||| |||||||||  | | |||||||||| || ||||||||||| ||||||||||   ||| ||||||  |||||||||||||| || | ||||    
T  18423463 taactttttaaatatttttttatacatatacccttttagaaaattgtgaaacattaaatacgtccgcgaatatt--aaagacaaacattacatgaaggat 18423366  T
Q  308 agaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||| | ||||||  ||||| ||||| |||||| || ||| |||||    
T  18423365 agaaaaatattttaaacaataattacacattaaaatttatgacatttt 18423318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 34262801 - 34262753
Alignment:
Q  274 ctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaa 322  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  34262801 ctaatattaaaaagacaaacattaattgagggttagaaaagtcttttaa 34262753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 34309370 - 34309310
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatac 268  Q
    ||||| |||||||||  ||||||||||||||||| ||||||| |||||||| |||||||||    
T  34309370 tgtaattttttgaatgcttttacaaatataccctcataaaaatttgtgaagtattaaatac 34309310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 17368928 - 17368974
Alignment:
Q  275 taatattaaaaagacaaacattaaataagggatagaaaagtctttta 321  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||    
T  17368928 taatattaaaaagacaaacattaaataaggactaaaaaagtctttta 17368974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 13027957 - 13027910
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaattgtgaag 258  Q
    ||||||||||||||||||||||||||| ||| ||| ||| ||||||||    
T  13027957 aactttttgaatatttttacaaatatatcctcatagaaatttgtgaag 13027910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 16268448 - 16268374
Alignment:
Q  282 aaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    |||||||||||||| |||||| || ||||||||| |||| |  |||||| | | ||||||| |||||||||||||    
T  16268448 aaaaagacaaacataaaataaaggttagaaaagtattttgaacaataacaatatcttaaaagttgtgatattttt 16268374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 44883181 - 44883218
Alignment:
Q  231 aaatatacccttataaaaaattgtgaagcattaaatac 268  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  44883181 aaatatacccttataaaaagttgtgaaacattaaatac 44883218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 37201448 - 37201508
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaatt 252  Q
    |||| |||||||||  ||||||||||  ||||||||||||||||| |  ||||||||||||    
T  37201448 tacaatcattaattgttgtaacttttaaaatatttttacaaatatgcttttataaaaaatt 37201508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 302
Target Start/End: Original strand, 44173635 - 44173723
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataa 302  Q
    ||||| ||| |||||| |||||||||||   ||||  |||| ||| ||||| || | || ||||||||||||||| |||||||||||||    
T  44173635 tttttaaatgtttttagaaatataccctcggaaaattttgtaaagtattaactatattcactaatattaaaaagataaacattaaataa 44173723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 192 - 349
Target Start/End: Original strand, 31707326 - 31707480
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||   |||||| | ||||||||||||||||||    
T  31707326 tacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaatttatgaagcat---atacacccactaatattaaaaagacaa 31707422  T
Q  292 acattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtga 349  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||    
T  31707423 acattaaataaggggtagaaaagtcttctaagcaataactacaccttaaaagttgtga 31707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 18838921 - 18838763
Alignment:
Q  197 tcattaattagtgtaactttttgaat-atttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacat 295  Q
    |||||||||| | ||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||||||||| || |||    
T  18838921 tcattaattaatataaatttttgaattatttttacaaatataccctcataaaaaattgtgaaacattaaatacacccactaatattaaaaagataatcat 18838822  T
Q  296 taaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||| |||| ||||||||||||||||  ||||| || ||||||||| || ||| |||||    
T  18838821 taaatgaggg-tagaaaagtcttttaaacaataattataccttaaaagttatgacatttt 18838763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 216 - 350
Target Start/End: Original strand, 42312399 - 42312540
Alignment:
Q  216 tttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatatt-------aaaaagacaaacattaaataagggata 308  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |  | ||||||||       |||||||||||||| ||| || |||||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaatatatcctctaatattaaaaaaaaaaaagacaaacataaaacaaaggata 42312498  T
Q  309 gaaaagtcttttaagtaataactacaccttaaaaattgtgat 350  Q
    ||||||||||||||| |||||||| ||||||||| |||||||    
T  42312499 gaaaagtcttttaagcaataactataccttaaaagttgtgat 42312540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 208 - 342
Target Start/End: Original strand, 25376834 - 25376968
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||| ||||||||| ||||||||||||||||||  |||||| |||||||| |||||||| |||| | |||||| ||||||  |||||||||| |||| |    
T  25376834 tgtaattttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatactcacaaatattgaaaagatcaacattaaatgagggtt 25376933  T
Q  308 agaaaagtcttttaagtaataactacaccttaaaa 342  Q
    |||||||||||||||  ||||| || |||||||||    
T  25376934 agaaaagtcttttaaacaataattataccttaaaa 25376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 322
Target Start/End: Original strand, 47231552 - 47231675
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||| ||||||| ||||||| ||||||||||||| | |||||||| |||||| ||||||    
T  47231552 tcattaattaatgtaactttttgaatatttttacaattata-cctcataaaaagttgtgaatcattaaatacacttgttaatattataaagac-aacatt 47231649  T
Q  297 aaataagggatagaaaagtcttttaa 322  Q
    ||||||| | || |||| ||||||||    
T  47231650 aaataagaggtaaaaaaatcttttaa 47231675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 30615274 - 30615130
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||||||||| |||||||||||||||| ||| |||||||||||| |||| |||||||||||    ||||||||||||||||||  ||||||| |  |||    
T  30615274 tgtaactttttaaatatttttacaaatacacctttataaaaaattatgaaacattaaatacatctactaatattaaaaagacaactattaaatgaatgat 30615175  T
Q  308 agaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
      |||| ||||||||||||||| |||| ||||||| ||||||||||||    
T  30615174 --aaaaatcttttaagtaataattaca-cttaaaagttgtgatatttt 30615130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 16572407 - 16572263
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||||||||| || ||||||| ||||||||| ||||| || ||||||||  ||||||||||    ||||||||||||| |||  |||||||| ||||||    
T  16572407 tgtaactttttaaacatttttaaaaatataccattatagaatattgtgaaatattaaatacaa---ctaatattaaaaatacagtcattaaatgagggat 16572311  T
Q  308 agaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    | |||| ||| ||||| |||||||||||||||||| |||||| |||||    
T  16572310 aaaaaattctgttaagcaataactacaccttaaaagttgtgacatttt 16572263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 25382491 - 25382395
Alignment:
Q  225 ttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtctttta 321  Q
    |||||||||||||||||||| |||| |||||||| |||||| | |||| |||||| ||||||||| ||||||||||||||| || ||||||| ||||    
T  25382491 ttttacaaatatacccttatgaaaatttgtgaagtattaaaaatactcactaatactaaaaagactaacattaaataagggctacaaaagtcattta 25382395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 27032295 - 27032149
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||||||||| |||||||| ||||||||||||||||| ||| |||||||  |||||||||| |  |||||||||||||  ||| ||||| || || | |    
T  27032295 tgtaactttttaaatatttt-acaaatatacccttatagaaagttgtgaaatattaaatacatttactaatattaaaaaagcaatcattacatgagaggt 27032197  T
Q  308 agaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||| | |||||||||| ||| |  ||||||||| ||||||||||||||    
T  27032196 agacaggtcttttaagcaattatcacaccttaagaattgtgatatttt 27032149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 355
Target Start/End: Original strand, 33721603 - 33721752
Alignment:
Q  210 taactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcg-ctaata---ttaaaaagacaaacattaaataaggg 305  Q
    ||||||||| |||| ||||||||| |||| || ||||||||||||||| ||||||||||||    ||||||   |||||| || ||||||||||  || |    
T  33721603 taactttttcaataattttacaaacatactctcataaaaaattgtgaaacattaaatacaccaaactaatactattaaaaggataaacattaaacgagag 33721702  T
Q  306 atagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
     ||||||||||||||||  ||||||||||| ||||||||||||| |||||    
T  33721703 gtagaaaagtcttttaaacaataactacacattaaaaattgtgacatttt 33721752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 32599733 - 32599809
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaataca 269  Q
    |||||||||||||||||  |||||||| |||| ||||| ||||||||| | |||||||||||||||||||||||||||    
T  32599733 tacattcattaattagtaaaacttttt-aataattttataaatataccttcataaaaaattgtgaagcattaaataca 32599809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 56093682 - 56093601
Alignment:
Q  275 taatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    ||||||||||||||  ||||| |||||| ||||| ||||||||||||| |||||| |||||||||||| || ||||||||||    
T  56093682 taatattaaaaagattaacatcaaataatggataaaaaagtcttttaaataataattacaccttaaaagttatgatattttt 56093601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 44884411 - 44884475
Alignment:
Q  278 tattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaa 343  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||  |||||||||||||||||||    
T  44884411 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaa 44884475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 34319682 - 34319563
Alignment:
Q  235 atacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactaca 334  Q
    ||||||| |||||||||||| || ||||||||| |  |   ||||||||||||| |||||||||||||||| ||||||||  ||||||  ||||||  ||    
T  34319682 ataccctcataaaaaattgtaaaacattaaatatatccataaatattaaaaagaaaaacattaaataaggg-tagaaaagctttttaaacaataaccgca 34319584  T
Q  335 ccttaaaaattgtgatatttt 355  Q
    | ||||||||||||| |||||    
T  34319583 ctttaaaaattgtgacatttt 34319563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 44720556 - 44720634
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacac 270  Q
    |||| ||||| |||| |||||| ||||||||||||||| ||||||| ||| |||||||||||  || ||||||||||||    
T  44720556 tacaatcattgattaatgtaacattttgaatatttttataaatatatcctcataaaaaattgcaaaacattaaatacac 44720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 4960610 - 4960533
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaaga 288  Q
    |||||||  |||||||||||||||||| | ||||| ||| ||||||| ||||||||||| || ||||| |||||||||    
T  4960610 aacttttaaaatatttttacaaatatatctttatagaaagttgtgaaacattaaatacaatcactaatgttaaaaaga 4960533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 355
Target Start/End: Complemental strand, 21128246 - 21128107
Alignment:
Q  216 tttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagt 315  Q
    |||||||||||||| |||||||| |||||   ||| |||||| |||  || | |||| ||||||| ||||||| |||||| |||| |||| | |||||||    
T  21128246 tttgaatatttttataaatatactcttattggaaaatgtgaaacatataacatactcactaatataaaaaagataaacataaaatgagggttggaaaagt 21128147  T
Q  316 cttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||  ||||| || || |||||| || ||| |||||    
T  21128146 cttttaaaaaataaatatacattaaaagttatgacatttt 21128107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 42183602 - 42183535
Alignment:
Q  225 ttttacaaatatacccttataaaaaa-ttgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||| || |  |||||||||||||||||    
T  42183602 ttttacaaatatatcctcataaaaaaattgtgaagcattaaataaacacattaatattaaaaagacaa 42183535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 345
Target Start/End: Complemental strand, 2632541 - 2632404
Alignment:
Q  210 taactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgc----taatattaaaaagacaaacattaaataaggg 305  Q
    ||||||| | |||||||||||||||||   |||||||||||||||||| ||||||||   ||  |    | ||||||||||||||| ||||||| || ||    
T  2632541 taactttataaatatttttacaaatatcttcttataaaaaattgtgaaacattaaattatctatcggagtgatattaaaaagacaatcattaaa-aaagg 2632443  T
Q  306 atagaaaagtcttttaagtaataactacaccttaaaaatt 345  Q
    ||| |||| | ||||||  |||||||||||||||||||||    
T  2632442 ata-aaaaatattttaaacaataactacaccttaaaaatt 2632404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 4960343 - 4960275
Alignment:
Q  279 attaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgt 347  Q
    ||||||| |||||||||||||| || | || ||||| |||||||| | |||| ||||||||||||||||    
T  4960343 attaaaatgacaaacattaaatgagaggtataaaagacttttaagcattaacaacaccttaaaaattgt 4960275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 38216077 - 38216018
Alignment:
Q  283 aaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaa 342  Q
    |||||||||||||||||| | |||||||||| ||||||| | ||||| || |||||||||    
T  38216077 aaaagacaaacattaaatgaaggatagaaaaatcttttatgcaataaatataccttaaaa 38216018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 27184255 - 27184327
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaataca 269  Q
    |||||||||| |  |||||||||||||| |||| ||||| ||| | || |||| |||||||| ||||||||||    
T  27184255 tcattaattaatccaactttttgaatatctttaaaaataaaccatcattaaaatttgtgaagtattaaataca 27184327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 199 - 355
Target Start/End: Complemental strand, 18705166 - 18705010
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaa 298  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    |||||||||||| | |||||||||    
T  18705166 attaattagtgtaactttttgaatatttttacaaatatatccttataaaaagttgtgaagcattaaatacacctattaatattaaaaacaaaaacattaa 18705067  T
Q  299 ataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||| || || ||||||||||||||||||||||||||||||||| || |||| ||||    
T  18705066 ataaagggtaaaaaagtcttttaagtaataactacaccttaaaagttatgatgtttt 18705010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 6688958 - 6688798
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgcta--atattaaaaagacaaaca 294  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||| ||||||||||||||||  |||  |||||||||| | | | |    
T  6688958 tcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtaaagcattaaatacacttactaatatattaaaaacaaacata 6688859  T
Q  295 ttaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  6688858 ttaaataagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgatatttt 6688798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 355
Target Start/End: Original strand, 3629190 - 3629346
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaa 298  Q
    |||||||  ||||||||||| || ||||||||||||||| ||||||| ||  ||||||| ||||||||||| || ||||||||||||| |||  ||||||    
T  3629190 attaattgttgtaactttttaaacatttttacaaatataaccttatagaatgttgtgaaacattaaatacattcactaatattaaaaatacagtcattaa 3629289  T
Q  299 ataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    || ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  3629290 attagggatacaaaagtcttttaagtaataactacaccttaaaagttgtgacatttt 3629346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 224 - 331
Target Start/End: Complemental strand, 7735896 - 7735789
Alignment:
Q  224 tttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaag 323  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| | |||||||||||||  ||||||||||| |||||||    
T  7735896 tttttacaaatatacccttataaaaaattgtcaaacattaaatacacccgctaatattaaaaacaaaaacattaaataattgatagaaaagttttttaag 7735797  T
Q  324 taataact 331  Q
    ||||||||    
T  7735796 taataact 7735789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 210 - 346
Target Start/End: Original strand, 11691051 - 11691185
Alignment:
Q  210 taactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatag 309  Q
    |||||||||||||||||||||||||| | ||| |||||| ||| ||||  ||||||||||||| |||| |||||||||| ||||||||||| ||||||||    
T  11691051 taactttttgaatatttttacaaatacatcctcataaaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaatgagggatag 11691150  T
Q  310 aaaagtcttttaagtaataactacaccttaaaaattg 346  Q
      |||||||||||| ||||||||||||| ||||||||    
T  11691151 --aagtcttttaagaaataactacacctaaaaaattg 11691185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 2225747 - 2225624
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaa 298  Q
    |||||||||||||||||||  |||||||||||||||||||| | ||||||| ||||||| |||||||||||  | ||||||||||||| | |||||||||    
T  2225747 attaattagtgtaacttttgaaatatttttacaaatataccttcataaaaagttgtgaaacattaaatacaaccactaatattaaaaacaaaaacattaa 2225648  T
Q  299 ataagggatagaaaagtcttttaa 322  Q
    ||||  | ||||||||||||||||    
T  2225647 ataaatggtagaaaagtcttttaa 2225624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 209 - 342
Target Start/End: Original strand, 11983573 - 11983705
Alignment:
Q  209 gtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggata 308  Q
    ||||||||||||||| |||||||||||||| ||| ||||| |||||||| |||||||||||  | ||||||||||||||| ||||||||||| |||| ||    
T  11983573 gtaactttttgaatacttttacaaatatactcttgtaaaa-attgtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggta 11983671  T
Q  309 gaaaagtcttttaagtaataactacaccttaaaa 342  Q
     |||| ||||||||  ||||| ||||||||||||    
T  11983672 aaaaaatcttttaaacaataattacaccttaaaa 11983705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 10705154 - 10705035
Alignment:
Q  235 atacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactaca 334  Q
    ||||||| |||||||||| | |||||| || |||| || | ||| |||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||    
T  10705154 ataccctcataaaaaattataaagcataaagtacattcacaaatgttaaaaagacaagcattaaattagggatagaaaagtcttttaaataa-aactaca 10705056  T
Q  335 ccttaaaaattgtgatatttt 355  Q
    ||||||||||||||| |||||    
T  10705055 ccttaaaaattgtgacatttt 10705035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 19296165 - 19296295
Alignment:
Q  224 tttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaag 323  Q
    |||||||| ||||||||| ||||||| |||| ||  |||||| |||  |||||||||||||| || |||||||||||| || ||||||||||||||||||    
T  19296165 tttttacatatataccctcataaaaa-ttgtaaaatattaaacacatccgctaatattaaaatgagaaacattaaatatgg-atagaaaagtcttttaag 19296262  T
Q  324 taataactacaccttaaaaattgtgatattttt 356  Q
     ||||||||||| |||||| |||||| ||||||    
T  19296263 caataactacactttaaaagttgtgacattttt 19296295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 4449589 - 4449448
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt-aaataagggatagaaa 312  Q
    |||||||||||||||||||||||||||| || | |||||||||  |||||||||||  |  ||| |||||||||||||||||| |||| |||| || |||    
T  4449589 tttttgaatatttttacaaatataccctcatgagaaattgtga--cattaaatacaaccattaagattaaaaagacaaacattgaaatgaggg-taaaaa 4449493  T
Q  313 agtcttttaagtaataact--acaccttaaaaattgtgatatttt 355  Q
    ||||||||||| ||||| |  |||||||||||||||||| |||||    
T  4449492 agtcttttaagaaataaatacacaccttaaaaattgtgacatttt 4449448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 3257265 - 3257346
Alignment:
Q  274 ctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  ||||  ||| |||||||| ||||||||||||    
T  3257265 ctaatattaaaaagacaaacattaaataagagatagaaaagtcttttaaacaatagttacgccttaaaagttgtgatatttt 3257346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 29948046 - 29948151
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||| ||| |||||||||||  |||||||||||||||||| || |||||||||| | || ||||||||||||||  |||||||||||| | |||||||    
T  29948046 tcattatttaatgtaacttttttgatatttttacaaatatactctaataaaaaattataaaacattaaatacactcattaatattaaaaatataaacatt 29948145  T
Q  297 aaataa 302  Q
    ||||||    
T  29948146 aaataa 29948151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 14418008 - 14417911
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaa 311  Q
    ||||| |||||| |||||||| |||| | |||||||||||||||||||||||||||| | |||||||| |||| ||||| |||||| ||||| |||||    
T  14418008 ttttttaatattcttacaaatttaccttcataaaaaattgtgaagcattaaatacacccactaatatttaaaatacaaatattaaacaaggggtagaa 14417911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 36482410 - 36482534
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||||||||| | | |||||||||||||||| |||    || ||||||| ||||||||||| || |||||| || ||| ||||  |||||||||||| |    
T  36482410 tgtaactttttaattttttttacaaatatacctttaatggaagttgtgaaacattaaatacattcactaataatagaaatacaattattaaataaggggt 36482509  T
Q  308 agaaaagtcttttaagtaataacta 332  Q
    |||||||||||||||| ||||||||    
T  36482510 agaaaagtcttttaagcaataacta 36482534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 354
Target Start/End: Complemental strand, 27193156 - 27193023
Alignment:
Q  221 atatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtctttt 320  Q
    ||||||||||||||||| | | |||||||||| |||| ||||||| | ||||  | |||||||||||| |  |||||||| | ||||| |||||||||||    
T  27193156 atatttttacaaatatatcatcataaaaaattatgaaacattaaaaatactcagttatattaaaaagagatgcattaaatgaaggataaaaaagtctttt 27193057  T
Q  321 aagtaataactacaccttaaaaattgtgatattt 354  Q
    ||  |||||||| | ||||||| |||||| ||||    
T  27193056 aaacaataactatatcttaaaagttgtgacattt 27193023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 322
Target Start/End: Complemental strand, 14917877 - 14917771
Alignment:
Q  212 actttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaa 311  Q
    ||||||| || |||||||||||||||||||  ||||||||||||||| ||||||||||| |   | |||||||| |  ||||||||||||| || |||||    
T  14917877 actttttaaacatttttacaaatataccctcgtaaaaaattgtgaagaattaaatacacac---attattaaaaggctaaacattaaataatgg-tagaa 14917782  T
Q  312 aagtcttttaa 322  Q
    | |||||||||    
T  14917781 atgtcttttaa 14917771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 73627 - 73576
Alignment:
Q  305 gatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||| ||||    
T  73627 gatagaaaagtcttttaagcaataactacaccttaaaggttgtgataatttt 73576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 73682 - 73647
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaa 232  Q
    |||||||||||||||||||||| |||||||||||||    
T  73682 tcattaattagtgtaacttttttaatatttttacaa 73647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 35547034 - 35547112
Alignment:
Q  200 ttaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaat 278  Q
    ||||||| | ||||||||| ||||||||||| |||||||| ||||| ||| ||||||| | || |||||| || |||||    
T  35547034 ttaattattataactttttaaatatttttacgaatataccattatagaaagttgtgaaacttttaatacattcactaat 35547112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 10656485 - 10656545
Alignment:
Q  294 attaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||| ||||| |||||||||||| |||||||||| | ||||| || |||||||||    
T  10656485 attaaataagg-atagataagtcttttaagcaataactacatcataaaagttttgatatttt 10656545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 17693617 - 17693573
Alignment:
Q  311 aaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||| ||||||| |||| |||||||||||||| |||||    
T  17693617 aaagtcttttatgtaataaatacatcttaaaaattgtgacatttt 17693573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 36477875 - 36477907
Alignment:
Q  197 tcattaattagtgtaactttttgaatattttta 229  Q
    |||||||||| ||||||||||||||||||||||    
T  36477875 tcattaattaatgtaactttttgaatattttta 36477907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 192 - 355
Target Start/End: Complemental strand, 154514 - 154351
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    |||| ||||||||||||||||||| ||||||||||||||||| || |||| |||||||| ||||||||||||||||||| | | ||||||||||||||||    
T  154514 tacactcattaattagtgtaacttgttgaatatttttacaaacatgccctcataaaaaactgtgaagcattaaatacacccaccaatattaaaaagacaa 154415  T
Q  292 acattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||||  | || ||| |||||||||  |||||||||||||||||| |||| |||||||    
T  154414 acattaaataaaaggtaaaaaggtcttttaaacaataactacaccttaaaagttgtaatatttt 154351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 40344911 - 40345067
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||||||||| |||    
T  40344911 tcattgattattgcaactttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaaat--actcactaatattaaaaagacaaatatt 40345008  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||| |||| || |||||||| ||||| ||| |||||||||||||| |||||| |||||    
T  40345009 aaatgaggggtataaaagtctcttaagcaatgactacaccttaaaagttgtgacatttt 40345067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 194 - 356
Target Start/End: Original strand, 17003553 - 17003713
Alignment:
Q  194 cattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaac 293  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||| | |||||||| |||||| ||||    
T  17003553 cattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaac 17003651  T
Q  294 attaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    ||||||| ||||||| ||||||| |||||| |||||||||||||||||| |||||| ||||||    
T  17003652 attaaat-agggataaaaaagtcatttaagcaataactacaccttaaaagttgtgacattttt 17003713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 194 - 355
Target Start/End: Complemental strand, 45261533 - 45261375
Alignment:
Q  194 cattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaac 293  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||||| |  |||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  45261533 cattcattgattaatgtaactttttgaacatttttacaaatataccctca--aaaaattgtgaaacattaaatacacccactaatatttaaaagagaaac 45261436  T
Q  294 attaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||| ||||||||||||||| |||||| |||||||||| ||||||| |||||| |||||    
T  45261435 attaaat-agggatagaaaagtcatttaagcaataactacagcttaaaagttgtgacatttt 45261375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 211 - 355
Target Start/End: Original strand, 8825352 - 8825494
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggataga 310  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||||||||  | |  |||||||| | |||||||    
T  8825352 aactttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaatattaaaataa-agtcattaaatgaaggataga 8825450  T
Q  311 aaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||    
T  8825451 aaagtcttttaagcaataactacacctt-aaaattgtgacatttt 8825494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 198 - 355
Target Start/End: Original strand, 46918443 - 46918599
Alignment:
Q  198 cattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatta 297  Q
    ||||||||  ||||| ||||| || ||||||||||||||||||||||| || ||| |||| ||||||||||| ||  |||||||||||||||| ||||||    
T  46918443 cattaattgttgtaaatttttaaacatttttacaaatatacccttatagaatattttgaaacattaaatacattcattaatattaaaaagacagacatta 46918542  T
Q  298 aataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||| | ||||| |||||||||||||| ||||||||  ||||||||||||||| |||||    
T  46918543 aatgaaggataaaaaagtcttttaagcaataacta-tccttaaaaattgtgacatttt 46918599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 355
Target Start/End: Complemental strand, 35455461 - 35455319
Alignment:
Q  209 gtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggata 308  Q
    |||||||||||||||||| ||||||||||| |  ||||||||||||||| |||||||||||||| |||||||| |||  | |||||||||||| ||||||    
T  35455461 gtaactttttgaatatttctacaaatatactc--ataaaaaattgtgaaacattaaatacactcactaatatttaaat-ataaacattaaata-gggata 35455366  T
Q  309 gaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||| |||||| ||||| |||||||||||| |||||| |||||    
T  35455365 gaaaagtcatttaagcaataattacaccttaaaagttgtgacatttt 35455319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 355
Target Start/End: Original strand, 43320129 - 43320268
Alignment:
Q  210 taactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatag 309  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||      | |||||||||||||||| |||| ||| |||    
T  43320129 taactttttgaatatttttacaaatacacccttataaaaaatcgcgaagcattaaatacattc------actaaaaagacaaacattgaataggggctag 43320222  T
Q  310 aaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||||||  |||||| ||||||||||| |||||| |||||    
T  43320223 aaaagtcttttaaacaataaccacaccttaaaagttgtgacatttt 43320268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 342
Target Start/End: Complemental strand, 36659350 - 36659210
Alignment:
Q  200 ttaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaac-attaa 298  Q
    ||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||  ||| ||||||||   |||| |||||    
T  36659350 ttaattaatgtaactttttgaatatttttacaagtataccctaataaaaaattatgaaacattaaatacactcattaacattaaaaa---aaactattaa 36659254  T
Q  299 ataagggatagaaaagtcttttaagtaataactacaccttaaaa 342  Q
    ||| |||||| |||||||| ||||| | ||||||||||||||||    
T  36659253 ataggggataaaaaagtctcttaagcagtaactacaccttaaaa 36659210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 28695715 - 28695553
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatat--acccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaaca 294  Q
    ||||||||||||||||||||||||||||||||||||||||  || |||||||||| ||||||| ||||||  ||| |  ||||||||||||| | ||||     
T  28695715 tcattaattagtgtaactttttgaatatttttacaaatatacacgcttataaaaagttgtgaaacattaaccacagttactaatattaaaaacaaaaacg 28695616  T
Q  295 ttaaataa--gggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||  || | | |||||||||| || |||||||||||| |||||| ||||||||||||    
T  28695615 ttaaataaagggtaaaaaaaagtctttaaaataataactacacgttaaaatttgtgatatttt 28695553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 208 - 341
Target Start/End: Original strand, 30041296 - 30041429
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||| ||||||||| |||||| ||||||||||| ||||| | |||||||| |||||||| |  | ||||||||||||||||||||||||| |||||| |    
T  30041296 tgtaattttttgaatgtttttataaatataccctcataaagatttgtgaagtattaaatataaccactaatattaaaaagacaaacattaattaagggtt 30041395  T
Q  308 agaaaagtcttttaagtaataactacaccttaaa 341  Q
    |||||||||||||||  ||||| || ||||||||    
T  30041396 agaaaagtcttttaaacaataaatataccttaaa 30041429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 263 - 355
Target Start/End: Original strand, 32211834 - 32211926
Alignment:
Q  263 aaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||| |||||| |||||    
T  32211834 aaatacacccactaatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaatttt 32211926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 52596622 - 52596764
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaa-ttgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaa 312  Q
    ||||||||||||||||| |||||||| | |||||||| |||||||| |||  ||| |  | |||| | ||||| ||||||||||||||||||| ||||||    
T  52596622 tttttgaatatttttacgaatataccatcataaaaaaattgtgaagtatttgatatatccactaaaactaaaaggacaaacattaaataaggg-tagaaa 52596720  T
Q  313 agtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
      | ||||||||||||||| |||||||||| |||| ||||||||    
T  52596721 ttttttttaagtaataactgcaccttaaaagttgtaatattttt 52596764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 25295082 - 25295181
Alignment:
Q  248 aaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgt 347  Q
    |||||||||| |||| |||| || | ||||||||||||||| || |||||||| ||||||| |||||||||||||  ||||| |||||||||||| ||||    
T  25295082 aaattgtgaaacatttaataaacccactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaacaataattacaccttaaaagttgt 25295181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 49983850 - 49983782
Alignment:
Q  224 tttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaa 292  Q
    |||||||||||||||||| ||||||| |||||||| |||||||| || | |||||||||||||||||||    
T  49983850 tttttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaa 49983782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 356
Target Start/End: Complemental strand, 24650262 - 24650131
Alignment:
Q  225 ttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagt 324  Q
    ||||||||||||||  |||||||||||||||||  ||||||||  ||| ||||||||||||||||||| ||||||  | || || |||||| |||| |      
T  24650262 ttttacaaatatacttttataaaaaattgtgaaatattaaatatgctcactaatattaaaaagacaaaaattaaaagaaggttaaaaaagtttttttaac 24650163  T
Q  325 aataactacaccttaaaaattgtgatattttt 356  Q
    ||||| || ||||||||| |||| || |||||    
T  24650162 aataaatataccttaaaagttgtaattttttt 24650131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 43105143 - 43105234
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataaggg 305  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||| || ||||| || | |||||||| ||||||  |||||||||| ||||    
T  43105143 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtatcaaatatacccactaatattgaaaagatcaacattaaatgaggg 43105234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 30577946 - 30577825
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||| ||||| ||| |||||||||||||||| | |||||||   |||||| |||||||| |    ||||| || ||||||| |||||||||| ||||||    
T  30577946 tgtaattttttaaatgtttttacaaatataccatcataaaaatgagtgaagtattaaatatatctactaatgttgaaaagaccaacattaaatgagggat 30577847  T
Q  308 agaaaagtcttttaagtaataa 329  Q
    ||||| ||||||||| ||||||    
T  30577846 agaaacgtcttttaaataataa 30577825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 22923800 - 22923709
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaaga 288  Q
    |||||||||  |||||||||||  ||||||||||||||||||| | ||||||| |||||| | |||||||| ||   |||||||||||||||    
T  22923800 tcattaattgttgtaactttttatatatttttacaaatataccttcataaaaatttgtgatgtattaaatatacctactaatattaaaaaga 22923709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 47860756 - 47860611
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||| |||||||||||  |||||||||| |||||||||| ||||||||             ||||||| | |||| |||||||||| ||  |||    
T  47860756 tcattaattaatgtaactttttagatatttttactaatataccctcataaaaaa-------------aatacacccactaagattaaaaagagaataatt 47860670  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||| | ||||| ||| ||||||||||||||||||| |||||||||  ||||| |||||    
T  47860669 aaatgaaggataaaaatgtcttttaagtaataactataccttaaaagatgtgacatttt 47860611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 49983646 - 49983600
Alignment:
Q  276 aatattaaaaagacaaacattaaataagggatagaaaagtcttttaa 322  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  49983646 aatattaaaaagacaaacattaaatgagggttagaaaagtcttttaa 49983600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 329
Target Start/End: Complemental strand, 55452597 - 55452469
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaata-ttaaaaagacaaacatta 297  Q
    |||||||| ||||||||||| |||  |||| ||||||||| | ||   ||||||||||  ||||||||||||   |||||| ||||||||||| | ||||    
T  55452597 attaattattgtaacttttttaattcttttgcaaatatactcata---aaaattgtgagtcattaaatacacctactaatacttaaaaagacagatatta 55452501  T
Q  298 aataagggatagaaaagtcttttaagtaataa 329  Q
    | | |||||||||||| ||||||||| |||||    
T  55452500 attgagggatagaaaaatcttttaagcaataa 55452469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 355
Target Start/End: Complemental strand, 41560135 - 41559998
Alignment:
Q  212 actttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaa 311  Q
    ||||||||||| |||||| ||||||||| | ||||||| |||||||| || |      ||| ||||||||| ||||||||||||||||| || | || ||    
T  41560135 actttttgaatgtttttataaatataccttcataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgagagttaaaa 41560042  T
Q  312 aagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||| | |||| |  | |||||||||| |||| ||||    
T  41560041 aagtcttttaaatcataaatgtatcttaaaaattatgatttttt 41559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 320
Target Start/End: Complemental strand, 35104821 - 35104715
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    ||||||||| ||| ||||||||||||||  |||||  || ||| | |||||||| || | |||||||| ||||||| |||||||||| | || |||||||    
T  35104821 tttttgaatgtttgtacaaatataccctcttaaaattttttgaggtattaaatatacacactaatattgaaaagaccaacattaaatgaaggttagaaaa 35104722  T
Q  314 gtctttt 320  Q
     ||||||    
T  35104721 atctttt 35104715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 42279227 - 42279285
Alignment:
Q  209 gtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaata 267  Q
    |||||||||| |||||||||||||||||||||| ||||||| || ||||  ||||||||    
T  42279227 gtaacttttttaatatttttacaaatataccctcataaaaatttatgaaatattaaata 42279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 25286165 - 25286246
Alignment:
Q  275 taatattaaaaagacaaacattaaataagggat-agaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||||||||||||||||||| |||| | |||||| ||||||||   ||||||| || ||||||||| ||| |||||    
T  25286165 taatattaaaaagacaaacattaaattaggggtaagaaaattcttttaaaatataactaaactttaaaaattttgaaatttt 25286246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 25286044 - 25286104
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaa 257  Q
    |||||||||| ||||||||||| ||| |||||| ||||||| | ||||| |||||||||||    
T  25286044 tcattaattattgtaacttttttaatgtttttataaatatatctttatagaaaattgtgaa 25286104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 25294832 - 25294904
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaa 264  Q
    |||| |||||||||| || |||| ||| |||||||||| ||| |||| || ||||||||||||||| ||||||    
T  25294832 tacaatcattaattaatgaaactatttaaatatttttataaacatactctcataaaaaattgtgaaacattaa 25294904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 48271745 - 48271817
Alignment:
Q  215 ttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaag 287  Q
    |||||||||||| |||||||||||||| ||  ||| || ||||||||||||| |||   ||||||||||||||    
T  48271745 ttttgaatatttatacaaatataccctcatggaaagttttgaagcattaaatgcacatactaatattaaaaag 48271817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 355
Target Start/End: Original strand, 50452285 - 50452428
Alignment:
Q  209 gtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaa-tacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    |||||||||| |||||||||||||||||| | ||||||||||   | || ||||||| |||| ||| ||||||| |||||| | |  |||||||||||||    
T  50452285 gtaactttttaaatatttttacaaatatatctttataaaaaa--ataaaacattaaattaca-tcgttaatatt-aaaagatagaagttaaataagggat 50452380  T
Q  308 agaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    | |  ||||||||||  ||||  || |||||||||||| |||||||||    
T  50452381 acacgagtcttttaaacaatagttataccttaaaaattatgatatttt 50452428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 27828598 - 27828555
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaa 257  Q
    |||||||||||||||||||||||||| | ||||||| |||||||    
T  27828598 tttttgaatatttttacaaatataccttcataaaaatttgtgaa 27828555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 21698510 - 21698571
Alignment:
Q  290 aaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgata 351  Q
    |||||||||||| ||| ||||||| ||||||||  |||| ||||| ||||||| ||||||||    
T  21698510 aaacattaaatatggggtagaaaaatcttttaaacaatatctacatcttaaaagttgtgata 21698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 18084392 - 18084424
Alignment:
Q  246 aaaaattgtgaagcattaaatacactcgctaat 278  Q
    ||||||||||||||||||||||||||| |||||    
T  18084392 aaaaattgtgaagcattaaatacactcactaat 18084424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 224 - 355
Target Start/End: Original strand, 39150187 - 39150317
Alignment:
Q  224 tttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaag 323  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||  |||||||||||| | |||||||||||||||| |||||||||||||||||    
T  39150187 tttttacaaatataccctcataaaag-ttgtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaag 39150285  T
Q  324 taataactacaccttaaaaattgtgatatttt 355  Q
     |||||||||||||||||| | ||||||||||    
T  39150286 caataactacaccttaaaagtagtgatatttt 39150317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 42454854 - 42455010
Alignment:
Q  201 taattagtgtaactttt-tgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaa 299  Q
    |||||||||||| |||| |||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||    
T  42454854 taattagtgtaatttttttgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaagacaaacgttaaa 42454953  T
Q  300 taagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    |||  |  | |||||||||||||  | | |||||||||||||| |||||| ||||||    
T  42454954 taaaaggcataaaagtcttttaaacattcactacaccttaaaagttgtgacattttt 42455010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 9851798 - 9851949
Alignment:
Q  203 attagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataa 302  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||||| || | |||||||| |||||| ||||||||||| |    
T  9851798 attaatgtaactttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaacattaaat-a 9851896  T
Q  303 gggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||| ||| ||| |||||| ||||||||||| |||||| |||||| |||||    
T  9851897 gggataaaaaggtcatttaagcaataactacactttaaaagttgtgacatttt 9851949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 355
Target Start/End: Original strand, 36437179 - 36437336
Alignment:
Q  198 cattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaataca-ctcgctaatattaaaaagacaaacatt 296  Q
    ||||||||  ||||||||||| || ||||||||||||||||||||||| ||  ||||||| ||||||||||| | | ||||||||||||||||| |||||    
T  36437179 cattaattgttgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatcccactaatattaaaaagacagacatt 36437278  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||| ||||||| |||||||||||||| ||||||||  |||||||| |||||| |||||    
T  36437279 aaatgagggataaaaaagtcttttaagcaataacta-tccttaaaagttgtgacatttt 36437336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 355
Target Start/End: Original strand, 28165099 - 28165262
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    |||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    | ||||||||||||| ||    
T  28165099 tacaatcatcaattattgtaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctaccaatattaaaaagataa 28165198  T
Q  292 acattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    | | | ||| |||| || |||| ||||||||| |||||||| ||||| ||| |||||| |||||    
T  28165199 agacttaatgaggggtaaaaaaatcttttaagcaataactatacctttaaagttgtgacatttt 28165262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 354
Target Start/End: Complemental strand, 31152591 - 31152448
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||||||||||||||||||||||||||||| || |||||||  |||||| ||||||||||  || |||||||||||| || ||||||||||| |||| |    
T  31152591 tgtaactttttgaatatttttacaaatatacgctcataaaaa--tgtgaaacattaaatacgttcactaatattaaaa-gagaaacattaaatgaggggt 31152495  T
Q  308 agaaaagtcttttaagtaataactacaccttaaaaattgtgatattt 354  Q
    || ||||||||||||| |||||| ||| ||||||| |||||||||||    
T  31152494 agcaaagtcttttaagcaataacgacatcttaaaagttgtgatattt 31152448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 194 - 356
Target Start/End: Complemental strand, 28470100 - 28469944
Alignment:
Q  194 cattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaac 293  Q
    |||||||| |||| || |||||||||||||||||     | |||| || ||||||||||||||| |||||||||||| | | |||||| |||||| ||||    
T  28470100 cattcattgattaatgcaactttttgaatatttt-----acatactctcataaaaaattgtgaaacattaaatacacccacaaatatttaaaagagaaac 28470006  T
Q  294 attaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattttt 356  Q
    ||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||| ||||||    
T  28470005 attaaataa-ggatagaaaagacatttaagtaataactacaccttaaaatttgtgacattttt 28469944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 355
Target Start/End: Original strand, 31181043 - 31181189
Alignment:
Q  210 taactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatatt-aaaaagacaaacattaaataagggata 308  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| | |  ||    
T  31181043 taactttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatacactcgctaatattaaaaaaaaaaaacattaaatgaagtgta 31181142  T
Q  309 gaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
     |||||||||||||  |||||||| |  |||||| |||||| |||||    
T  31181143 aaaaagtcttttaaacaataactataagttaaaagttgtgacatttt 31181189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 214 - 349
Target Start/End: Original strand, 17971358 - 17971493
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    ||||||||| ||||||||||||||||||  |||||| |||||||| |||||||| || | |||||||| ||||||| |||||||||| |||| |||||||    
T  17971358 tttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaatgagggttagaaaa 17971457  T
Q  314 gtcttttaagtaataactacaccttaaaaattgtga 349  Q
    |||||||||  ||||| || ||||||||| ||||||    
T  17971458 gtcttttaaacaataaatataccttaaaagttgtga 17971493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 349
Target Start/End: Complemental strand, 46443852 - 46443719
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    |||||||||||||||||||||||||||  ||||||| ||||||| ||||| ||||| || |||| |||||||||| ||  || |||| ||||||| ||||    
T  46443852 tttttgaatatttttacaaatatacccacataaaaa-ttgtgaaacattatatacattcactaacattaaaaagagaactat-aaatgagggataaaaaa 46443755  T
Q  314 gtcttttaagtaataactacaccttaaaaattgtga 349  Q
    || ||||||||||||| |||||||||||| ||||||    
T  46443754 gttttttaagtaataattacaccttaaaagttgtga 46443719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 31003574 - 31003652
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaa 286  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||||||||    
T  31003574 tgtaactttttgaatatttttacaaatatacctttatagaaaattgttaaacattaaatacattcgctaatattaaaaa 31003652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 28723954 - 28724075
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||| |||||||||  ||||||| ||||||||| ||||||| |||||||| |||||||| |  | ||||||||||||||| ||||||||| | |||| |    
T  28723954 tgtaattttttgaatgcttttacagatataccctcataaaaatttgtgaagtattaaatataaccactaatattaaaaagataaacattaattgagggtt 28724053  T
Q  308 agaaaagtcttttaagtaataa 329  Q
    ||||||||||||||| ||||||    
T  28724054 agaaaagtcttttaaataataa 28724075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 32715850 - 32715736
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggat 307  Q
    ||||| ||||||||| |||||||||||||| ||| ||||||| |||||||| |||||||| || | |||||||| ||||||  |||||||||| |||| |    
T  32715850 tgtaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatatacccactaatattgaaaagatcaacattaaatgagggct 32715751  T
Q  308 agaaaagtcttttaa 322  Q
    ||||||| |||||||    
T  32715750 agaaaagacttttaa 32715736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 355
Target Start/End: Complemental strand, 42745700 - 42745555
Alignment:
Q  209 gtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggata 308  Q
    |||||||||| || ||||||||||||||||||||||| ||  ||||||| |||||||||||  | |||||||||||||| ||| | |||||| |||||||    
T  42745700 gtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaaggcaatccttaaatgagggata 42745601  T
Q  309 gaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
     |||||| ||||||  ||||| || || | ||||||||||| |||||    
T  42745600 -aaaagtattttaaacaataattatacttcaaaaattgtgacatttt 42745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 210 - 335
Target Start/End: Original strand, 2619678 - 2619804
Alignment:
Q  210 taactttttgaatatttttacaaatatacccttataaaaaa-ttgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggata 308  Q
    ||||||||||||||||| | ||| |||||||| |||||||| |||| ||||||||||| || || ||||| || |||| ||||||||||||| |||| ||    
T  2619678 taactttttgaatatttgtgcaattataccctcataaaaaaattgtcaagcattaaatgcattctctaatgtttaaaaaacaaacattaaatgaggggta 2619777  T
Q  309 gaaaagtcttttaagtaataactacac 335  Q
    |||||   |||||| ||||||||||||    
T  2619778 gaaaaaaattttaaataataactacac 2619804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 355
Target Start/End: Original strand, 27442368 - 27442508
Alignment:
Q  214 tttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaa 313  Q
    ||||||||| |||||||||||||| ||| ||||||| |||||||| |||||||| || |  |||||||  |||||| |||||||||| |||| |||||||    
T  27442368 tttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatatacccattaatatt-gaaagaccaacattaaatgagggttagaaaa 27442466  T
Q  314 gtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||||  | ||| || || |||||| ||||||| ||||    
T  27442467 gtcttttaaacactaaatatactttaaaagttgtgatttttt 27442508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 355
Target Start/End: Complemental strand, 3574894 - 3574737
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactc--gctaatattaaaaagacaaacatt 296  Q
    |||||||| ||||| ||||||||| |||||| |||||||| ||||||||||||||||||  |||||||||| ||    ||||||||||| || |||||||    
T  3574894 attaattattgtaa-tttttgaatgtttttataaatatactcttataaaaaattgtgaaatattaaatacattcaaattaatattaaaatgataaacatt 3574796  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||| |||| |||| || | ||||||  ||||||||||  | |||| |||||| |||||    
T  3574795 aaatgaggggtagacaaattttttaaacaataactacatttgaaaagttgtgacatttt 3574737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 355
Target Start/End: Complemental strand, 11435707 - 11435564
Alignment:
Q  205 tagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagg 304  Q
    ||||||||||||||| |||||||||||       ||| |||||||||||||| ||||||||||||  | ||||||||||||| |||||||||||||||      
T  11435707 tagtgtaactttttgcatatttttacat------cctcataaaaaattgtgatgcattaaatacatccactaatattaaaaaaacaaacattaaataaat 11435614  T
Q  305 gatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||| |||||| ||||||  ||||| || |||||| || |||||| |||||    
T  11435613 gatataaaagt-ttttaaacaataattataccttataagttgtgacatttt 11435564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 17988348 - 17988420
Alignment:
Q  283 aaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||| || ||||||||||||| || |||||||||||||  |||||||||||||||||| |||||| |||||    
T  17988348 aaaagagaagcattaaataaggggtaaaaaagtcttttaaacaataactacaccttaaaagttgtgacatttt 17988420  T

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Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 45691591 - 45691641
Alignment:
Q  208 tgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaag 258  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||||||||    
T  45691591 tgtaattttttgaatatttttacaaatataccctcataaaaatttgtgaag 45691641  T

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Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 25130280 - 25130217
Alignment:
Q  199 attaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcatt 262  Q
    |||||||| ||||| |||||||||| ||||||||||||||| | ||| ||||||||||| ||||    
T  25130280 attaattattgtaaatttttgaatacttttacaaatataccatcatagaaaattgtgaaacatt 25130217  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 24547519 - 24547437
Alignment:
Q  274 ctaatattaaaaagacaaacattaaataagggatagaaaag-tcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    |||||||| |||||||||||||||||| | ||||| ||||| | ||||  |||||||||||| ||||||| |||||| |||||    
T  24547519 ctaatattgaaaagacaaacattaaatgaaggatataaaagtttttttttgtaataactacatcttaaaacttgtgacatttt 24547437  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 52336850 - 52336904
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaat 251  Q
    |||||||||| |||||||||||  |||||||||| |||||||||| |||||||||    
T  52336850 tcattaattaatgtaactttttagatatttttactaatataccctcataaaaaat 52336904  T

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Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 347
Target Start/End: Original strand, 948144 - 948271
Alignment:
Q  211 aactttttgaatatttttacaaatatacccttataaaaaa-ttgtgaagcattaaatacactcgctaatattaaaaagacaaacattaaataagggatag 309  Q
    |||||||| ||||||||| |||||||||||| |||||||| ||| ||| |||||||||||  | ||||| |||||||         ||||| ||||||||    
T  948144 aactttttaaatattttttcaaatataccctgataaaaaatttgcgaaacattaaatacatccactaat-ttaaaaa---------taaatgagggatag 948233  T
Q  310 aaaagtcttttaagtaataactacaccttaaaaattgt 347  Q
    |||| ||||||| |  ||||||||| ||||||||||||    
T  948234 aaaaatcttttaggctataactacatcttaaaaattgt 948271  T

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Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 25130099 - 25130026
Alignment:
Q  277 atattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgat 350  Q
    |||||||||||||| ||| |||||||| | || |||| ||||||||  |||||||||  |||||||||||||||    
T  25130099 atattaaaaagacagacaataaataagaggtaaaaaattcttttaaacaataactacgtcttaaaaattgtgat 25130026  T

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Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 17988133 - 17988205
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaataca 269  Q
    |||||||| | | ||||||||  |||| ||||||||||||| ||| |||| |||||||||| |||||||||||    
T  17988133 tcattaataaatataacttttaaaataattttacaaatatatcctcataataaattgtgaaacattaaataca 17988205  T

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Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 26976612 - 26976675
Alignment:
Q  259 cattaaatacactcgctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaa 322  Q
    |||||| |||||||  |||||||||||||||||| ||||||| |||||||  ||| ||||||||    
T  26976612 cattaagtacactctttaatattaaaaagacaaatattaaatgagggataacaaattcttttaa 26976675  T

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Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 34702259 - 34702213
Alignment:
Q  309 gaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
    ||||||||||||||| |||||||||| ||||||| ||| ||||||||    
T  34702259 gaaaagtcttttaagcaataactacaacttaaaagttgagatatttt 34702213  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 24547806 - 24547737
Alignment:
Q  212 actttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatatt 281  Q
    ||||||| |||| ||||||||||||| || |||| ||| |||||||  |||||||||| || ||||||||    
T  24547806 actttttaaataattttacaaatatatccctatagaaagttgtgaacgattaaatacattcactaatatt 24547737  T

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Target: scaffold0088 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 192 - 354
Target Start/End: Complemental strand, 51447 - 51285
Alignment:
Q  192 tacattcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaa 291  Q
    |||| |||||||||| |||||| |||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||   |||| |||||||||| ||    
T  51447 tacaatcattaattaatgtaacattttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaaagagaa 51348  T
Q  292 acattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatattt 354  Q
      ||||||| ||||||| |||| ||||||||| ||||| |||||||||||| |||||| ||||    
T  51347 ttattaaatgagggataaaaaaatcttttaagcaataaatacaccttaaaagttgtgacattt 51285  T

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Target: scaffold1809 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 197 - 341
Target Start/End: Original strand, 476 - 620
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||  ||||||||||| || ||||||||||||||||||||||| ||  ||||||| ||||||||  |  | |||||||||||| ||||| ||||    
T  476 tcattaattgttgtaactttttaaagatttttacaaatatacccttatagaatgttgtgaaacattaaatggatccactaatattaaaacgacaatcatt 575  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaa 341  Q
    |||| ||||||| |||||||||||||  |||||||||||||||||    
T  576 aaatgagggataaaaaagtcttttaaacaataactacaccttaaa 620  T

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Target: scaffold0836 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 3191 - 3033
Alignment:
Q  197 tcattaattagtgtaactttttgaatatttttacaaatatacccttataaaaaattgtgaagcattaaatacactcgctaatattaaaaagacaaacatt 296  Q
    |||||||||  |||| |||||| || ||||||||||| || |||||||| ||  ||||||| |||||||||||  | ||||||||||||||| ||  |||    
T  3191 tcattaattcttgtacctttttaaacatttttacaaacatgcccttatagaatgttgtgaaacattaaatacatccactaatattaaaaagagaattatt 3092  T
Q  297 aaataagggatagaaaagtcttttaagtaataactacaccttaaaaattgtgatatttt 355  Q
     ||| |||||||||||||||||||||  |||||||||||||||||| |||||| |||||    
T  3091 gaatgagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgacatttt 3033  T

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Target: scaffold0026 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 68890 - 68823
Alignment:
Q  274 ctaatattaaaaagacaaacattaaataagggatagaaaagtcttttaagtaataactacaccttaaaaa 343  Q
    |||||||||||| |||||||||||||| ||| ||| |||||||||||||  |||||||||||||||||||    
T  68890 ctaatattaaaacgacaaacattaaatgaggaataaaaaagtcttttaa--aataactacaccttaaaaa 68823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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