View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_low_20 (Length: 362)
Name: NF5474_low_20
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 39869450 - 39869785
Alignment:
| Q |
19 |
gttatctcctttttcaataaataatataataaaaaattgatacactatggtcagtttgtgcttcaaatgctttttcttgaattgtttgtagagatgagag |
118 |
Q |
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| T |
39869450 |
gttatctcctttttcaattaataatataataaaaaattgatacactatggtcagtttgtgcttcaaatgctttttcttgaattgtttgtagagacgagag |
39869549 |
T |
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| Q |
119 |
gatagtttcccgagcaatcaaagtgaatgagcaacttcagaaagttctagagagacatgatgaccttctttctagcaaagatacaacaactgtgaatcac |
218 |
Q |
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| T |
39869550 |
gatagtttcccgagcaatcgaagtgaatgagcaacttcagaaagttctagagagacatgatgaccttctttctagcaaagatacaacaactgtgaatcac |
39869649 |
T |
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| Q |
219 |
tttgaccatgaagaagcagaggaggaggaagaacctgaacagttattcagaaggtgacttgctagttatttagctcgccaaatttcttcccttttaaaaa |
318 |
Q |
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| T |
39869650 |
tttgaccatgaagaagcagaggaggaggaagaacctgaacagttattcagaaggtgacttgctagttatttagctcgccaaatttcttcccttttaaaaa |
39869749 |
T |
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| Q |
319 |
agtattaaacttggtatttgagtattcattcatctc |
354 |
Q |
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| T |
39869750 |
agtattaaacttggtatttgagtattcattcatctc |
39869785 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 44617096 - 44617184
Alignment:
| Q |
103 |
tttgtagagatgagaggatagtttcccgagcaatcaaagtgaatgagcaacttcagaaagttctagagagacatgatgaccttctttct |
191 |
Q |
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| T |
44617096 |
tttgtagagatgagaggatagtttctcgagcaattgaattaaacgaacagcttcagaaagttcttgcaagacatgatgaccttgtttct |
44617184 |
T |
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