View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_low_22 (Length: 357)
Name: NF5474_low_22
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 9039050 - 9038722
Alignment:
| Q |
11 |
cagagatcctttgcaccttgttctttttaacaataactcgatggacatggctcttatattttccattggttaagacctataataaaatgaatcattagtg |
110 |
Q |
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| T |
9039050 |
cagagatcctttgcaacttgttctttttaacaataactcgatggacatggctcttatattttccattggttaagacctataataaaatgaatcattagtg |
9038951 |
T |
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| Q |
111 |
aggatgagttaatattattcagaagacttaagttaatggatttgactcttcgaaaaatgaaagttagtagaatgaaaaaattgttcattatcaatttatc |
210 |
Q |
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| T |
9038950 |
aggatgagttaatattattcagaagacttaagttaatggatttgactcttcgaaaaatgaaagttagtagaatgaaaaaattgttcattatcaatttgtc |
9038851 |
T |
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| Q |
211 |
atgcatgtgtgtataatatcaataatttattttttcgattatctgatgatattattcattttacattagtttccgaagtttccaacatagctaggaaaat |
310 |
Q |
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| T |
9038850 |
atgcatgtgtgtataacatcaataatttattttttcgattatctgatgatattattcattttacattagtttccaaagtttccaacatagctaggaaaat |
9038751 |
T |
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| Q |
311 |
gaaa-taatttcaataaaagtacctcaag |
338 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
9038750 |
gaaactaatttcaataaaagtacctcaag |
9038722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 9031640 - 9031566
Alignment:
| Q |
11 |
cagagatcctttgcaccttgttctttttaacaataactcgatggacatggctcttatattttccattggttaaga |
85 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9031640 |
cagatatcctttgcaccttgttcttgttaacaataactcgatggacgtggctcttatattttccattggttaaga |
9031566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 9048488 - 9048416
Alignment:
| Q |
11 |
cagagatcctttgcaccttgttctttttaacaataactcgatggacatggctcttatattttccattggttaa |
83 |
Q |
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|||||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||| ||||| |
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| T |
9048488 |
cagagatcctttgcaccttgttgttgttaacaattactcggtggacatgactcttatatttcccattagttaa |
9048416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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