View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5474_low_25 (Length: 314)
Name: NF5474_low_25
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_25 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 146 - 314
Target Start/End: Original strand, 44942227 - 44942395
Alignment:
| Q |
146 |
tagacttaagagagctctccactgtatagattcatttttgagcaccaactctattcttaacagcatcagcagcctcttgtgccttagccttcatttgttg |
245 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44942227 |
tagacttaagagagctctccactatatagattcatttttgagcaccaactctattcttaacagcatcagcagcctcttgtgccttagccttcatttgttg |
44942326 |
T |
|
| Q |
246 |
accagcctacagcagcaaataaatttcagtagtccgcaaaattgcttatttaaaattgatcattcacat |
314 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44942327 |
accagcctacaacaacaaataaatttcagtagtccgcaaaattgcttatttaaaattgatcattcacat |
44942395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 6463846 - 6463953
Alignment:
| Q |
149 |
acttaagagagctctccactgtatagattcatttttgagcaccaactctattcttaacagcatcagcagcctcttgtgccttagccttcatttgttgacc |
248 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||| || || |||| |||||||||||||||||||||| || ||||||||||| ||| | |
|
|
| T |
6463846 |
acttaagagagctccccaccacatagattcatttgtgagcaccatctgtactctttacagcatcagcagcctcttgtgtgtttgccttcatttgctgatc |
6463945 |
T |
|
| Q |
249 |
agcctaca |
256 |
Q |
| |
|
| |||||| |
|
|
| T |
6463946 |
accctaca |
6463953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 6453123 - 6453225
Alignment:
| Q |
147 |
agacttaagagagctctccactgtatagattcatttttgagcaccaactctattcttaacagcatcagcagcctcttgtgccttagccttcatttgttga |
246 |
Q |
| |
|
|||||||||||||||| || || |||||||||||| |||||||||||| || |||| ||||||||||| |||||||||| | ||||||||||| ||| |
|
|
| T |
6453123 |
agacttaagagagctccccgctacatagattcatttgtgagcaccaactgtaatctttgcagcatcagcaacctcttgtgcatctgccttcatttgctga |
6453222 |
T |
|
| Q |
247 |
cca |
249 |
Q |
| |
|
||| |
|
|
| T |
6453223 |
cca |
6453225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 52951216 - 52951110
Alignment:
| Q |
150 |
cttaagagagctctccactgtatagattcatttttgagcaccaactctattcttaacagcatcagcagcctcttgtgccttagccttcatttgttgacca |
249 |
Q |
| |
|
||||||||| |||||| || |||||||||||| ||||||||| || || | || || || |||||| ||||| ||||||| |||||||||| |||||| |
|
|
| T |
52951216 |
cttaagagaactctccgcttcatagattcatttgtgagcaccatctgtactttttactgcgtcagcaacctctcgtgcctttgccttcatttactgacca |
52951117 |
T |
|
| Q |
250 |
gcctaca |
256 |
Q |
| |
|
||||||| |
|
|
| T |
52951116 |
gcctaca |
52951110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University