View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_low_26 (Length: 273)
Name: NF5474_low_26
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 105 - 254
Target Start/End: Original strand, 7858871 - 7859020
Alignment:
| Q |
105 |
aaacaaatataagactcaaattttgcaatgtcataccttaataaggataagcgacctcaccacgctcaatgcgcttgatatcctctttgagtatctcata |
204 |
Q |
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| T |
7858871 |
aaacaaatataagactcaaattttgcaatgtcataccttaataaggataagcgacctcaccacgctcaatgcgcttgatatcctctttgagtatctcata |
7858970 |
T |
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| Q |
205 |
gtgccttttaacatcctcaacagattttccgaccactttagccacattgt |
254 |
Q |
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| T |
7858971 |
gtgccttttaacatcctcaacagattttccgaccactttagccacattgt |
7859020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7858217 - 7858326
Alignment:
| Q |
1 |
aatgaaatacacctcttatcatttcaaattttgctccatgaaaattaaattctttatgtgaagagtgtaaataattttgacttgttttttatgaatgata |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7858217 |
aatgaaatacacctcttatcatttcaaatcttgctccatgaaaattaaattctttatgtgaagagtgtaaataattttgacttgttttttacgaatgata |
7858316 |
T |
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| Q |
101 |
atagaaacaa |
110 |
Q |
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|||||||||| |
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| T |
7858317 |
atagaaacaa |
7858326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 32880441 - 32880375
Alignment:
| Q |
188 |
tctttgagtatctcatagtgccttttaacatcctcaacagattttccgaccactttagccacattgt |
254 |
Q |
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| T |
32880441 |
tctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggccacattgt |
32880375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 32885268 - 32885202
Alignment:
| Q |
188 |
tctttgagtatctcatagtgccttttaacatcctcaacagattttccgaccactttagccacattgt |
254 |
Q |
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| T |
32885268 |
tctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggccacattgt |
32885202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 32899311 - 32899245
Alignment:
| Q |
188 |
tctttgagtatctcatagtgccttttaacatcctcaacagattttccgaccactttagccacattgt |
254 |
Q |
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|||||||| ||||||||||| || |||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
32899311 |
tctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggccacattgt |
32899245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 32867320 - 32867244
Alignment:
| Q |
163 |
accacgctcaatgcgcttgatatcctctttgagtatctcatagtgccttttaacatcctcaacagattttccgacca |
239 |
Q |
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|||| ||||||||||| | | ||| |||||||| || ||||| |||||||||||||| ||||| |||||||| |||| |
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| T |
32867320 |
accatgctcaatgcgcctaacatcttctttgaggatttcataatgccttttaacatcttcaactgattttcccacca |
32867244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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