View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5474_low_27 (Length: 255)
Name: NF5474_low_27
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_27 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 17463564 - 17463808
Alignment:
| Q |
11 |
catcatcatggcctgaaatttcaacaagagaagcttagcatctagttccttaacatgttcatgcaacttgatcacatcaacctcaatgcttctttgacat |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
17463564 |
catcataatggcctgaaatttcaacaagagaagcttagcatttagttccttaacatgttcatgcaacttgatcatatcaacctcaatgcgtctttgacat |
17463663 |
T |
|
| Q |
111 |
atgtcttcaccaacagatactttttgtggaagtccttcaggaccatctgagctccatgttgccatttttctatttaccaaaccctatatnnnnnnntgga |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |
|
|
| T |
17463664 |
atgttttcaccaacagatactttttgtggaagtccttcaggaccatctgagctccatgctgccatttttctatttaccaaaccctatataaaaaaataga |
17463763 |
T |
|
| Q |
211 |
tcaaattttagcataactcatacttcatttggcaaaaggggtttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17463764 |
tcaaattttagcataactcatacttcatttggcaaaaggggtttt |
17463808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 17456364 - 17456486
Alignment:
| Q |
77 |
cttgatcacatcaacctcaatgcttctttgacatatgtcttcaccaacagatactttttgtggaa---gtccttcaggaccatctgagctccatgttgcc |
173 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || |||||||||||||||||||| |||||| || |||||||||||||||| |||||||| ||| |
|
|
| T |
17456364 |
cttgatcagatcaacctcaaggcttctttcccaaatgtcttcaccaacagatacattttgttcaaaagctccttcaggaccatctaagctccataccgcc |
17456463 |
T |
|
| Q |
174 |
atttttctatttaccaaacccta |
196 |
Q |
| |
|
|||||| ||| | ||||||||| |
|
|
| T |
17456464 |
attttttaattgatcaaacccta |
17456486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 255
Target Start/End: Complemental strand, 774780 - 774653
Alignment:
| Q |
127 |
atactttttgtggaagtccttcaggaccatctgagctccatgttgccatttttctatttaccaaaccctatatnnnnnnntggatcaaattttagcataa |
226 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
774780 |
atacattttgtacaagtccttcaggaccatctgagctccatgctgccatttttctatttgccaaacactatat-aaaaaatggatcaaattttagcataa |
774682 |
T |
|
| Q |
227 |
ctcatacttcatttggcaaaaggggtttt |
255 |
Q |
| |
|
| ||||||| ||||| |||||||||||| |
|
|
| T |
774681 |
caaatacttcttttggtaaaaggggtttt |
774653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University