View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_low_29 (Length: 251)
Name: NF5474_low_29
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 5740242 - 5740060
Alignment:
| Q |
19 |
aatatggctaaagataataagcaacaacaattaaatacaaaatactttatgaattatgagataacattatttaccaaaacataacataagcattaaaaca |
118 |
Q |
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| T |
5740242 |
aatatggctaaagataataagcaacaacaattaaatacaaaatgctttatgaattatgagataacattatttaccaaaacataacataagcattaaaaca |
5740143 |
T |
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| Q |
119 |
tgcatacaaaccttttgaagtttaataaaacgagacccatccatggttaacttaatcctaaaagttgatcgcaaaaactaatt |
201 |
Q |
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| T |
5740142 |
tgcatacaaaccttttgaagtttaataaaacgagacccatccatggttaacttaatcctaaaagttgatcgcaaaaactaatt |
5740060 |
T |
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