View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5474_low_32 (Length: 237)

Name: NF5474_low_32
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5474_low_32
NF5474_low_32
[»] chr1 (6 HSPs)
chr1 (180-221)||(41196738-41196779)
chr1 (183-213)||(39941390-39941420)
chr1 (180-213)||(4068132-4068165)
chr1 (180-213)||(6337792-6337825)
chr1 (180-213)||(15515383-15515416)
chr1 (185-213)||(39941532-39941560)
[»] chr5 (11 HSPs)
chr5 (180-213)||(29922225-29922258)
chr5 (180-213)||(1473373-1473406)
chr5 (180-213)||(1943027-1943060)
chr5 (180-213)||(12467281-12467314)
chr5 (180-213)||(22201972-22202005)
chr5 (180-213)||(24030232-24030265)
chr5 (180-213)||(31637130-31637163)
chr5 (180-213)||(40697018-40697051)
chr5 (180-213)||(41534640-41534673)
chr5 (180-213)||(42852039-42852072)
chr5 (181-213)||(7984123-7984155)
[»] chr4 (10 HSPs)
chr4 (180-225)||(7148789-7148834)
chr4 (186-221)||(896993-897028)
chr4 (183-213)||(17222849-17222879)
chr4 (180-213)||(8057124-8057157)
chr4 (180-213)||(12495682-12495715)
chr4 (180-213)||(28074382-28074415)
chr4 (180-221)||(43415317-43415358)
chr4 (180-221)||(43699511-43699552)
chr4 (180-213)||(48686966-48686999)
chr4 (109-142)||(49443608-49443641)
[»] chr8 (7 HSPs)
chr8 (180-216)||(1089030-1089066)
chr8 (180-213)||(13265501-13265534)
chr8 (180-213)||(28879075-28879108)
chr8 (180-213)||(34286599-34286632)
chr8 (180-213)||(35168477-35168510)
chr8 (178-214)||(23412749-23412785)
chr8 (180-212)||(32213059-32213091)
[»] chr3 (6 HSPs)
chr3 (180-216)||(5129848-5129884)
chr3 (180-221)||(10521171-10521212)
chr3 (180-221)||(10667415-10667456)
chr3 (180-213)||(52421177-52421210)
chr3 (180-213)||(53218076-53218109)
chr3 (178-210)||(34707752-34707784)
[»] chr2 (4 HSPs)
chr2 (181-213)||(36501551-36501583)
chr2 (180-213)||(42839356-42839389)
chr2 (180-212)||(12683643-12683675)
chr2 (181-213)||(33321439-33321471)
[»] chr7 (3 HSPs)
chr7 (186-216)||(14691332-14691362)
chr7 (180-221)||(41677391-41677432)
chr7 (123-175)||(20159459-20159511)
[»] scaffold0157 (1 HSPs)
scaffold0157 (180-213)||(24762-24795)
[»] chr6 (2 HSPs)
chr6 (180-213)||(1240647-1240680)
chr6 (180-221)||(21891366-21891407)


Alignment Details
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 41196779 - 41196738
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgtcgttt 221  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  41196779 ataagtttttatgtattattcataagcttgtcaatgtagttt 41196738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 39941390 - 39941420
Alignment:
Q  183 agtttttatgtattattcataagcttgtcaa 213  Q
    |||||||||||||||||||||||||||||||    
T  39941390 agtttttatgtattattcataagcttgtcaa 39941420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 4068132 - 4068165
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  4068132 ataagcttttatgtattattcataagcttgtcaa 4068165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 6337825 - 6337792
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  6337825 ataagcttttatgtattattcataagcttgtcaa 6337792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 15515416 - 15515383
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  15515416 ataagcttttatgtattattcataagcttgtcaa 15515383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 39941532 - 39941560
Alignment:
Q  185 tttttatgtattattcataagcttgtcaa 213  Q
    |||||||||||||||||||||||||||||    
T  39941532 tttttatgtattattcataagcttgtcaa 39941560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 29922258 - 29922225
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||||||||||||||||||||||||||||||||    
T  29922258 ataagtttttatgtattattcataagcttgtcaa 29922225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 1473373 - 1473406
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  1473373 ataagcttttatgtattattcataagcttgtcaa 1473406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 1943027 - 1943060
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||||||||||||||||| ||||||||||||||    
T  1943027 ataagtttttatgtattatccataagcttgtcaa 1943060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 12467281 - 12467314
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  12467281 ataagcttttatgtattattcataagcttgtcaa 12467314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 22202005 - 22201972
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  22202005 ataagcttttatgtattattcataagcttgtcaa 22201972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 24030232 - 24030265
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  24030232 ataagcttttatgtattattcataagcttgtcaa 24030265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 31637163 - 31637130
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  31637163 ataagcttttatgtattattcataagcttgtcaa 31637130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 40697018 - 40697051
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    |||||||||||||||||||| |||||||||||||    
T  40697018 ataagtttttatgtattatttataagcttgtcaa 40697051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 41534640 - 41534673
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  41534640 ataagcttttatgtattattcataagcttgtcaa 41534673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 42852039 - 42852072
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  42852039 ataagcttttatgtattattcataagcttgtcaa 42852072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 7984123 - 7984155
Alignment:
Q  181 taagtttttatgtattattcataagcttgtcaa 213  Q
    ||||||||||||||||||||||||| |||||||    
T  7984123 taagtttttatgtattattcataagtttgtcaa 7984155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 7148789 - 7148834
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgtcgtttttga 225  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||    
T  7148789 ataagcttttatgtattattcataagcttgtcaaggtagtttttga 7148834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 896993 - 897028
Alignment:
Q  186 ttttatgtattattcataagcttgtcaatgtcgttt 221  Q
    ||||||||||||||||||||||||||||||| ||||    
T  896993 ttttatgtattattcataagcttgtcaatgtagttt 897028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 17222849 - 17222879
Alignment:
Q  183 agtttttatgtattattcataagcttgtcaa 213  Q
    |||||||||||||||||||||||||||||||    
T  17222849 agtttttatgtattattcataagcttgtcaa 17222879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 8057157 - 8057124
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    |||||||||||| |||||||||||||||||||||    
T  8057157 ataagtttttatttattattcataagcttgtcaa 8057124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 12495715 - 12495682
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  12495715 ataagcttttatgtattattcataagcttgtcaa 12495682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 28074382 - 28074415
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  28074382 ataagcttttatgtattattcataagcttgtcaa 28074415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 43415358 - 43415317
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgtcgttt 221  Q
    |||||||||||||||||||||||||| |||| ||||| ||||    
T  43415358 ataagtttttatgtattattcataaggttgttaatgtagttt 43415317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 43699552 - 43699511
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgtcgttt 221  Q
    ||||| |||||||| |||||||||||||||||||||| ||||    
T  43699552 ataagcttttatgtcttattcataagcttgtcaatgtagttt 43699511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 48686966 - 48686999
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||||||||||||| ||||||||||||||||||    
T  48686966 ataagtttttatgtactattcataagcttgtcaa 48686999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 49443608 - 49443641
Alignment:
Q  109 gatttgaagtttgtaccttgaggttacaaggcta 142  Q
    |||||||| |||||||||||||||||||||||||    
T  49443608 gatttgaactttgtaccttgaggttacaaggcta 49443641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 1089030 - 1089066
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgt 216  Q
    ||||||||| |||||||||||||||||||||||||||    
T  1089030 ataagttttaatgtattattcataagcttgtcaatgt 1089066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 13265501 - 13265534
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  13265501 ataagcttttatgtattattcataagcttgtcaa 13265534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 28879075 - 28879108
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  28879075 ataagcttttatgtattattcataagcttgtcaa 28879108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 34286632 - 34286599
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  34286632 ataagcttttatgtattattcataagcttgtcaa 34286599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 35168510 - 35168477
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  35168510 ataagcttttatgtattattcataagcttgtcaa 35168477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 23412749 - 23412785
Alignment:
Q  178 atataagtttttatgtattattcataagcttgtcaat 214  Q
    |||||||| |||||||||||||||||| |||||||||    
T  23412749 atataagtatttatgtattattcataaacttgtcaat 23412785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 32213091 - 32213059
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtca 212  Q
    ||||| |||||||||||||||||||||||||||    
T  32213091 ataagcttttatgtattattcataagcttgtca 32213059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 5129884 - 5129848
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgt 216  Q
    ||||||||| |||||||||||||||||||||||||||    
T  5129884 ataagttttaatgtattattcataagcttgtcaatgt 5129848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 10521171 - 10521212
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgtcgttt 221  Q
    ||||| || |||||||||||||||||||||||||||| ||||    
T  10521171 ataagcttatatgtattattcataagcttgtcaatgtagttt 10521212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 10667415 - 10667456
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgtcgttt 221  Q
    ||||| || |||||||||||||||||||||||||||| ||||    
T  10667415 ataagcttatatgtattattcataagcttgtcaatgtagttt 10667456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 52421210 - 52421177
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  52421210 ataagcttttatgtattattcataagcttgtcaa 52421177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 53218109 - 53218076
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  53218109 ataagattttatgtattattcataagcttgtcaa 53218076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 34707784 - 34707752
Alignment:
Q  178 atataagtttttatgtattattcataagcttgt 210  Q
    ||||||| |||||||||||||||||||||||||    
T  34707784 atataagcttttatgtattattcataagcttgt 34707752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 36501583 - 36501551
Alignment:
Q  181 taagtttttatgtattattcataagcttgtcaa 213  Q
    |||||||||||||||||||||||||||||||||    
T  36501583 taagtttttatgtattattcataagcttgtcaa 36501551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 42839389 - 42839356
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    |||||||||||||||||||||||||| |||||||    
T  42839389 ataagtttttatgtattattcataagtttgtcaa 42839356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 12683675 - 12683643
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtca 212  Q
    ||||||||| |||||||||||||||||||||||    
T  12683675 ataagttttaatgtattattcataagcttgtca 12683643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 33321471 - 33321439
Alignment:
Q  181 taagtttttatgtattattcataagcttgtcaa 213  Q
    ||||||||||||||||| |||||||||||||||    
T  33321471 taagtttttatgtattactcataagcttgtcaa 33321439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 14691362 - 14691332
Alignment:
Q  186 ttttatgtattattcataagcttgtcaatgt 216  Q
    |||||||||||||||||||||||||||||||    
T  14691362 ttttatgtattattcataagcttgtcaatgt 14691332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 41677391 - 41677432
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgtcgttt 221  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  41677391 ataaatttttatgtattattcataagtttgtcaatgtagttt 41677432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 20159459 - 20159511
Alignment:
Q  123 accttgaggttacaaggctaggttctaatcattgaggtagcacctcaagtgta 175  Q
    |||||||| ||||||||||||| ||||| || |||  ||||||||||||||||    
T  20159459 accttgagattacaaggctaggctctaaccactgaactagcacctcaagtgta 20159511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 24762 - 24795
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  24762 ataagcttttatgtattattcataagcttgtcaa 24795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 1240680 - 1240647
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  1240680 ataagcttttatgtattattcataagcttgtcaa 1240647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 21891407 - 21891366
Alignment:
Q  180 ataagtttttatgtattattcataagcttgtcaatgtcgttt 221  Q
    ||||||||| || |||||||||||||||||||||||| ||||    
T  21891407 ataagttttgatatattattcataagcttgtcaatgtagttt 21891366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University