View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5474_low_33 (Length: 234)

Name: NF5474_low_33
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5474_low_33
NF5474_low_33
[»] chr8 (5 HSPs)
chr8 (22-234)||(479163-479375)
chr8 (22-152)||(43319121-43319252)
chr8 (26-121)||(40589810-40589905)
chr8 (23-152)||(7126170-7126300)
chr8 (25-108)||(8452160-8452243)
[»] chr2 (2 HSPs)
chr2 (23-148)||(39829037-39829163)
chr2 (22-152)||(87304-87435)
[»] chr1 (1 HSPs)
chr1 (26-152)||(5608268-5608395)
[»] chr5 (2 HSPs)
chr5 (22-152)||(20203907-20204038)
chr5 (22-150)||(8387030-8387159)
[»] chr4 (8 HSPs)
chr4 (22-152)||(28538893-28539024)
chr4 (22-152)||(56062949-56063080)
chr4 (23-152)||(26423272-26423402)
chr4 (22-149)||(55733960-55734088)
chr4 (23-151)||(28425143-28425272)
chr4 (22-152)||(2063719-2063850)
chr4 (22-152)||(49950270-49950401)
chr4 (46-152)||(51260659-51260766)
[»] chr7 (2 HSPs)
chr7 (22-152)||(3746196-3746324)
chr7 (22-110)||(16096329-16096417)
[»] chr6 (1 HSPs)
chr6 (25-151)||(11732757-11732884)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 479163 - 479375
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  479163 tggatcatttataacgctgacctgctgcccatgtccaattgtccacctagaaccatgtaaaagtagctgacacgaagtccaaatactccgccaagcaaag 479262  T
Q  122 -ttgggttattaccgagtttagcacccaaaaagaatgatataattgagactactaaataagttacnnnnnnnagtaatatttaaattgaacgaagaatat 220  Q
     | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||| ||||||||    
T  479263 ctcgggttattaccgagtttagcaccc-aaaagaatgatataattgagattactaaataagttactttttttagtaatatttaaattgaacaaagaatat 479361  T
Q  221 atataataaatttc 234  Q
    ||||||||||||||    
T  479362 atataataaatttc 479375  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 43319121 - 43319252
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43319121 tggatcattcataacgctgacatgcttcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaagcaaag 43319220  T
Q  122 -ttgggttattaccgagtttagcacccaaaaa 152  Q
     | ||||||||| |||||||||||||||||||    
T  43319221 ctcgggttattatcgagtttagcacccaaaaa 43319252  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 40589810 - 40589905
Alignment:
Q  26 tcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||| | ||||||||||||| ||||||| || ||||||||||||||||| |||||    
T  40589810 tcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgtaaaagtatctgacgcaaattccaaatactccgccaagcaaag 40589905  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 7126300 - 7126170
Alignment:
Q  23 ggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag- 121  Q
    ||||||||||| || ||||| || |||||| ||||||| ||||| ||| | |||| ||||||||  || |||||| |||||||||| |||||| |||||     
T  7126300 ggatcattcatcacactgacatgttgcccacgtccaatcgtccatctacacccatataaaagtaaatgtcgcgaattccaaatacttcgccaagcaaagc 7126201  T
Q  122 ttgggttattaccgagtttagcacccaaaaa 152  Q
    | |||||||||||||||||||||||| ||||    
T  7126200 tcgggttattaccgagtttagcaccctaaaa 7126170  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 8452160 - 8452243
Alignment:
Q  25 atcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatact 108  Q
    ||||||||| || || ||||||||||||| |||||||||||||||| | | || ||| |||| ||||| |||| || |||||||    
T  8452160 atcattcatcacactaacctgctgcccatatccaattgtccacctacatcaatataatagtaactgacacgaattctaaatact 8452243  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 39829037 - 39829163
Alignment:
Q  23 ggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag- 121  Q
    ||||||||||| ||||||||||| ||||||| |||||| ||||| ||| |||||| |||||||| ||||| |||| ||||||||||||||||| |||||     
T  39829037 ggatcattcatcacgctgacctgttgcccatctccaatcgtccatctacaaccatataaaagtaactgacacgaattccaaatactccgccaagcaaagc 39829136  T
Q  122 ttgggttattaccgagtttagcaccca 148  Q
    |||||||||||||||||||||||||||    
T  39829137 ttgggttattaccgagtttagcaccca 39829163  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 87435 - 87304
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    |||||||||||| ||||| ||||||||||||| ||||| ||| |||||| | ||||||||||||| |||||||||| |||| |||||||||||| |||||    
T  87435 tggatcattcatcacgctaacctgctgcccatttccaactgttcacctacatccatgtaaaagtatctgacgcgaattccatatactccgccaagcaaag 87336  T
Q  122 -ttgggttattaccgagtttagcacccaaaaa 152  Q
     |   |||||||||||||||||||||||||||    
T  87335 ctcaagttattaccgagtttagcacccaaaaa 87304  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 5608395 - 5608268
Alignment:
Q  26 tcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttg 124  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||| | ||||||||||||| |||||||||| |||||||||| | |||| ||||| |      
T  5608395 tcattcatcacgctgacctgctgcccatttccaactgtccacctacatccatgtaaaagtatctgacgcgaattccaaatacttctccaagcaaagctca 5608296  T
Q  125 ggttattaccgagtttagcacccaaaaa 152  Q
    |||||||||| |||||||||||||||||    
T  5608295 ggttattaccaagtttagcacccaaaaa 5608268  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 20204038 - 20203907
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    |||||||||||| |||||||  |||||||||| ||||| |||||||||| | || | |||||||| |||||||||| |||||||||||| |||| |||||    
T  20204038 tggatcattcatcacgctgatttgctgcccatttccaaatgtccacctacatccgtataaaagtaactgacgcgaattccaaatactcctccaagcaaag 20203939  T
Q  122 -ttgggttattaccgagtttagcacccaaaaa 152  Q
     | ||||||| |||||||||||||||||||||    
T  20203938 atcgggttataaccgagtttagcacccaaaaa 20203907  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 8387159 - 8387030
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    |||||||||||| || |||||||||||||||| ||||||||| || ||| | |||| ||||||||  ||||||||| |||||||||| | |||| |||||    
T  8387159 tggatcattcatcacactgacctgctgcccatttccaattgtgcatctacatccatataaaagtaattgacgcgaattccaaatacttctccaagcaaag 8387060  T
Q  122 tt-gggttattaccgagtttagcacccaaa 150  Q
    || |||||||  |||||||||| |||||||    
T  8387059 ttcgggttatatccgagtttaggacccaaa 8387030  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 28538893 - 28539024
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||| ||| | |||| |||||||| |||| | ||| ||||||||||||||||| ||||     
T  28538893 tggatcattcatcacgctgacctgctgcccatttccaactgtccatctacatccatataaaagtaactgatgtgaattccaaatactccgccaagcaaaa 28538992  T
Q  122 tt-gggttattaccgagtttagcacccaaaaa 152  Q
    || ||||||| ||||||| |||||||||||||    
T  28538993 ttcgggttataaccgagtctagcacccaaaaa 28539024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 56063080 - 56062949
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    |||||||||||| ||||||||||||||||||| | |||||||||| ||| | |||| |||||||| |||||||||| ||||||||||||  ||| |||||    
T  56063080 tggatcattcatcacgctgacctgctgcccattttcaattgtccatctacatccatataaaagtaactgacgcgaattccaaatactccttcaagcaaag 56062981  T
Q  122 -ttgggttattaccgagtttagcacccaaaaa 152  Q
     | |||||||  ||||||||||||||||||||    
T  56062980 ctcgggttatatccgagtttagcacccaaaaa 56062949  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 26423272 - 26423402
Alignment:
Q  23 ggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaac-aaag 121  Q
    ||||||||||| || ||||| || ||||||| |||||| ||||| ||| |||||| |||||||| |||||||||| ||||||||||||||||| | |||     
T  26423272 ggatcattcatcacactgacatgttgcccatctccaatcgtccatctacaaccatataaaagtaactgacgcgaattccaaatactccgccaaccaaaac 26423371  T
Q  122 ttgggttattaccgagtttagcacccaaaaa 152  Q
    ||||||||||||  |||||||||||||||||    
T  26423372 ttgggttattactaagtttagcacccaaaaa 26423402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 55734088 - 55733960
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||||||| | |||| |||||| | |||||| ||| ||||||||||||||||| ||| |    
T  55734088 tggatcattcatcacgctgacctgctgcccatttccaactgtccacctacatccatataaaagcaactgacgtgaattccaaatactccgccaagcaatg 55733989  T
Q  122 -ttgggttattaccgagtttagcacccaa 149  Q
     |  |||||| ||||||||||||||||||    
T  55733988 ctcaggttataaccgagtttagcacccaa 55733960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 28425272 - 28425143
Alignment:
Q  23 ggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag- 121  Q
    ||||||||||| | | | ||||| ||||||| |||||| ||||| ||| ||| || |||||||| |||||||||| ||||||||||||||||| |||||     
T  28425272 ggatcattcatcaagttaacctgttgcccatctccaatcgtccatctacaactatataaaagtaactgacgcgaattccaaatactccgccaagcaaagc 28425173  T
Q  122 ttgggttattaccgagtttagcacccaaaa 151  Q
    ||||| |||||||||||||||||| |||||    
T  28425172 ttgggctattaccgagtttagcactcaaaa 28425143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 2063850 - 2063719
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    ||||||||| || |||||||| |||||||||| | |||||||| ||||| | |||| ||||||||||||||| ||| ||||||||||||  ||| |||||    
T  2063850 tggatcatttatcacgctgacatgctgcccattttcaattgtctacctacatccatataaaagtagctgacgtgaattccaaatactccatcaagcaaag 2063751  T
Q  122 -ttgggttattaccgagtttagcacccaaaaa 152  Q
     | | ||||| || ||||||||||||||||||    
T  2063750 ctcgagttataactgagtttagcacccaaaaa 2063719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 49950401 - 49950270
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    |||||||||||| ||| |||| |||| ||||| |||||||||||||||| |   |||||||||||  | ||||||| ||||||||||||| ||| |||||    
T  49950401 tggatcattcatcacgttgacatgctacccatttccaattgtccacctacatttatgtaaaagtaattcacgcgaattccaaatactccgtcaagcaaag 49950302  T
Q  122 -ttgggttattaccgagtttagcacccaaaaa 152  Q
     | ||||||| ||| |||||||| ||||||||    
T  49950301 ctcgggttataacctagtttagctcccaaaaa 49950270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 51260659 - 51260766
Alignment:
Q  46 ctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggttattaccgagtttagca 144  Q
    |||||||| |||||||||||| ||| | |||| |||||||| || ||||||| |||||||||||| |||| ||||| | |||||||   |||||||||||    
T  51260659 ctgcccatttccaattgtccatctacatccatataaaagtaacttacgcgaattccaaatactcctccaagcaaagctcgggttatattcgagtttagca 51260758  T
Q  145 cccaaaaa 152  Q
    ||||||||    
T  51260759 cccaaaaa 51260766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 3746324 - 3746196
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 121  Q
    |||||||||||| |||||||| ||    ||||||||||||||||||||| ||| || |||||||| |||||||||| ||||||||||||||||| |||||    
T  3746324 tggatcattcatcacgctgacatga---ccatgtccaattgtccacctacaacaatataaaagtaactgacgcgaattccaaatactccgccaagcaaag 3746228  T
Q  122 -ttgggttattaccgagtttagcacccaaaaa 152  Q
     | ||||||| ||||||||||||||| |||||    
T  3746227 ctagggttataaccgagtttagcaccaaaaaa 3746196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 16096417 - 16096329
Alignment:
Q  22 tggatcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactcc 110  Q
    |||||| ||||| |||||||||||||  |||| |||||||||||||||| | |||| ||| |||| ||| | |||| ||||||||||||    
T  16096417 tggatctttcatcacgctgacctgctatccatttccaattgtccacctacatccatataacagtaactggcacgaattccaaatactcc 16096329  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 11732757 - 11732884
Alignment:
Q  25 atcattcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-tt 123  Q
    ||||||||| |||| ||| |||||||||| || |||| |||||||| | |||||||||| || |||||||||| |||||||||||| |||   |||| |     
T  11732757 atcattcatcacgccgacatgctgcccatttctaattatccacctacatccatgtaaaactaactgacgcgaattccaaatactccaccaggaaaagctc 11732856  T
Q  124 gggttattaccgagtttagcacccaaaa 151  Q
    ||||||| ||||||||| ||||||||||    
T  11732857 gggttataaccgagttttgcacccaaaa 11732884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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