View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_low_7 (Length: 542)
Name: NF5474_low_7
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 31816269 - 31816784
Alignment:
| Q |
18 |
aaaacagcagcaagaatagcatcttcaaagtccttagtatcaggcaacaaatcacacaacttattcttctcaaatgaaagccttcttgctttgttcccag |
117 |
Q |
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| T |
31816269 |
aaaacagcagcaagaatagcatcttcaaagtccttagtatcaggcaacaaatcacacaacttattcttctcaaatgaaagccttcttgctttgttcccag |
31816368 |
T |
|
| Q |
118 |
gcacacctaattccacattcaccttgttgctgttcacatcatccactctcagtaatcctgcagcatttccagaccttgttctcttaagtctctccgacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31816369 |
gcacacctaattccacattcaccttgttgctgttcacatcatccactctcagtaatcctgcagcatttccagaccttgttctcttaagtctctccgacaa |
31816468 |
T |
|
| Q |
218 |
attcaaattctcatttgattccttgaaagatgatttcgctgcataaaatggcggagctgcaacattaagtgagttgttcaccaaaggagtaaacttgttt |
317 |
Q |
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| T |
31816469 |
attcaaattctcatttgattccttgaaagatgatttcgctgcataaaatggcggagctgcaacattaagtgagttgttcaccaaaggagtaaacttgttt |
31816568 |
T |
|
| Q |
318 |
tgtggctgtgctgtgtaatttttcactatgttggtattggaattgatgttctcatcaccaaattcatcttgaattgttgttgatgttgttctcattggcg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31816569 |
tgtggctgtgctgtgtaatttttcactatgttggtattggaattgatgttctcatcaccaaattcatcttgaattgttgttgatgttgttctcattggcg |
31816668 |
T |
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| Q |
418 |
gcaagcttgtgtgaatgttatccttacaaggctgaggttgccagattgatgaagaaccaagaaaagcttcaaagagtctactttgttcaagcctgtctac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31816669 |
gcaagcttgtgtgaatgttatccttacaaggctgaggttgccagattgatgaagaaccaagaaaagcttcaaagagtctactttgttcaagcctgtctac |
31816768 |
T |
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| Q |
518 |
tcctcctctgttcatc |
533 |
Q |
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|||||||||||||||| |
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| T |
31816769 |
tcctcctctgttcatc |
31816784 |
T |
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