View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5474_low_8 (Length: 530)
Name: NF5474_low_8
Description: NF5474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5474_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 14923076 - 14923364
Alignment:
| Q |
1 |
gtcaaaggaaattgaaatattttaaacttttgactcgagcactatttgtcaattttaaactctcatactattttaattactaattcatttatccatctat |
100 |
Q |
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| T |
14923076 |
gtcaaaggaaattgaaatattttaaacttttgactcgagcactatttgtcaattttaaactctcatacgattttaa---ctaattcatttattcatctat |
14923172 |
T |
|
| Q |
101 |
agctatatcnnnnnnnnctttccccttaaatatctatagctacgtagcaattgtaaattcttaatcttttagtaatttgcttagcaatctgtacatcttt |
200 |
Q |
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| T |
14923173 |
agctatatcttttttttctttcccctcaaatatctatagctatgtagcaattgtaaattcttaatcttttagtaatttgcttagcaatctgtacatcttt |
14923272 |
T |
|
| Q |
201 |
cttaatacgacacaacatattgataaaggtatataccagacaattagaggaggggttcaccaatctccactttcctcttttcatacttaataagga |
296 |
Q |
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| T |
14923273 |
cttaatacgacacaacatattgataaagg----taccagacaatcaaaggaggggttcaccaatctccactttcctcttttcatacttaataagga |
14923364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 327 - 512
Target Start/End: Original strand, 14923412 - 14923600
Alignment:
| Q |
327 |
attataatataatcaaaccctatatctaagatatattcccaagaacacttcttcattgtcatctttttcaacnnnnnnnnn---gtacaaatccacatgc |
423 |
Q |
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| T |
14923412 |
attataatataatgaaaccctatatctaagatatattcccaagaacacttcttcattgtcatctttttcaacaaaaaaaaaaaagtacaaatccacatgc |
14923511 |
T |
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| Q |
424 |
atattcaatccatgtgatcccttgtattttgttgatttccaacccattcatcaacttacacttcttgaatgatttttgtatggctagtg |
512 |
Q |
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| T |
14923512 |
atattcaatccatatgatcccttgtattttgttgatttccaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtg |
14923600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 327 - 512
Target Start/End: Original strand, 14914926 - 14915109
Alignment:
| Q |
327 |
attataatataatcaaaccctatatctaagatatattcccaagaacacttcttcattgtcatctttttcaacnnnnnnnnn-gtacaaatccacatgcat |
425 |
Q |
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| T |
14914926 |
attataatataatcaaaccctatatctaagatatattcccaa---cacttcttcattgtcatctttttcaacaaaaaaaaaagtacaaatccacatgcat |
14915022 |
T |
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| Q |
426 |
attcaatccatgtgatcccttgtattttgttgatttccaacccattcatcaacttacacttcttgaatgatttttgtatggctagtg |
512 |
Q |
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| T |
14915023 |
attcaatccatgtgatcccttgtattttgttgattttcaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtg |
14915109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 14914631 - 14914866
Alignment:
| Q |
1 |
gtcaaaggaaattgaaatattttaaacttttgactcgagcactatttgtcaattttaaactctcatactattttaattactaattcatttatccatctat |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| |
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| T |
14914631 |
gtcaagggaaattgaaatattttaaacttttgactcgagcactattaagcaattttaaactctcatactatttta---accaattcattgatccatctag |
14914727 |
T |
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| Q |
101 |
agctatatc--nnnnnnnnctt----tccccttaaatatctatagctacgtagcaattgtaaattcttaatcttttagtaatttgc-ttagcaatctgta |
193 |
Q |
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|||| |||| ||| | |||| ||| ||||||||||| |||||||||||||| ||||||||||| || |||||||| |||| |
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| T |
14914728 |
agctgtatcttttttttttctttttcttccctcaaacatctatagcta---------tgtaaattcttaattttttagtaattcgctttagcaatatgta |
14914818 |
T |
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| Q |
194 |
catctttcttaatacgacacaacatattgataaaggtatataccagac |
241 |
Q |
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|||||| ||||||||||||| |||||||||||||| | |||||||||| |
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| T |
14914819 |
catcttgcttaatacgacacgacatattgataaagctctataccagac |
14914866 |
T |
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