View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5476_high_1 (Length: 767)

Name: NF5476_high_1
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5476_high_1
NF5476_high_1
[»] chr3 (1 HSPs)
chr3 (20-743)||(35656549-35657286)


Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 20 - 743
Target Start/End: Original strand, 35656549 - 35657286
Alignment:
Q  20 acatacacaccacaaatccc-catccactctccatcgcttccttttaagacccctcaataaccagctatctcacaatccttacatgaatcatcattgttc 118  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  35656549 acatacacaccacaaatccctcatccactctccatcacttcctcttaagacccctcaataaccagctatctcacaatccttacacgaaccatcattgttc 35656648  T
Q  119 aatttaatccaaccactcgtagagggcttccatcctatcacgacaaacatcttccacaactctgttagccttaatcggcataacataatccttcacaact 218  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35656649 aattttatccaaccactcgtagagggcttccatcctatcacgacgaacatcttccacaaatctgttagccttaatcggcataacataatccttcacaact 35656748  T
Q  219 taccgtacatgttgtgccagataaacgacgacaataatctttctaatgcaactctttgttctcaagtccacaaactatgacacgccaaacaacattcaca 318  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35656749 taccgcacatgttgtgccagataaacgacgacaataacctttctaatgcaactctttgttcttaagtccacaaactatgacacgccaaacaacattcaca 35656848  T
Q  319 tttcaacctgctgcaccaccgagattaaactgaattcatattatctgataatatcatgagatacgatatctcaatcgctatcaacgaacacacctcttta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35656849 tttcaacctgctgcaccaccgagattaaactgaattcatattatctgataatatcatgagatacgatatctcaatcgttatcaacgaacacacctcttta 35656948  T
Q  419 ttgca-------------attaaatacttgagaatatgaaataatacaatgaaactaaagatat------aatgtgatagactgtctaatctagatcgaa 499  Q
    |||||             ||||||||   | || ||||||||||| |||| ||| |||||||||      |||||||||||| || ||||||||||||||    
T  35656949 ttgcaagtaaaaatgttcattaaataagagggactatgaaataattcaataaaattaaagatattttatcaatgtgatagaccgtataatctagatcgaa 35657048  T
Q  500 cgacctcaaatatcccaagtttgcgtggaatattattgaatgtacgtgagtcggtgagtcggtccattgtttttatccaatgtagcttacaccatatcca 599  Q
    |||||||| |||||||||||||||||| |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  35657049 cgacctcagatatcccaagtttgcgtgaaatattattgaatgtac--------gtgagtcggtccattgtttttatccaatgtagcttacaccatatcca 35657140  T
Q  600 actattttgttgctgcacagcattagcatagcgcatgagaaaacctgaacag--aatagttcatgcggaatcattatcttcatcgctctctctttcttcg 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||| |||||||||||||||    
T  35657141 actattttgttgctgcacagcattagcatagcgcatgagaaaacctgaacagtaaatagttcatgcggaatcatcatcttcatcactctctctttcttcg 35657240  T
Q  698 atccccaaattctgcgaactgcgaaccctaatttcacatttcttcg 743  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35657241 atccccaaattctgcgaactgcgaaccctaatttcacatttcttcg 35657286  T

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