View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5476_high_4 (Length: 430)
Name: NF5476_high_4
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5476_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 11006443 - 11006750
Alignment:
| Q |
19 |
caattcatgaggcagatacaggccggtcttcatctccatctgtcttccttctctgcaattgtaactaatttaatttgtatgact-gtgaaagataaagta |
117 |
Q |
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| T |
11006443 |
caattcatgaggcagatacaggccggtcttcgtctccatctgtcttccttctctgcaattgtaactaatttaattt--atgacttgtgaaagataaagta |
11006540 |
T |
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| Q |
118 |
ttactacgttggtgatgaggtagtaagagagggctcagtgatatttaatccttctctggtactcttcaaaagttcattgttgagtactcttcctacatga |
217 |
Q |
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| T |
11006541 |
ttactacgttggtgatgagatagtaagagagggctcagtgatatttaatccttctctggtactcttcaaaagttcattgt-------------tacatga |
11006627 |
T |
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| Q |
218 |
atgtgatgctcaattctttaagtcaacgaacattatttatatattgcaaagggaaaagcagtaaacattgcgtgaaagccaacccaacatgttactttta |
317 |
Q |
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| T |
11006628 |
atgtgatggtccattctttaagtcaacgaacattatttatatattgcaaagggaaaagcagtaaacattgcgtgaaagccaacccaacatgttactttta |
11006727 |
T |
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| Q |
318 |
tattaaaaatgattaaatacatg |
340 |
Q |
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| T |
11006728 |
tattaaaaatgattaaatacatg |
11006750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 11006747 - 11006805
Alignment:
| Q |
372 |
catgactaactcttgtgtggagaaaattcaatgaaagagaaaaatacatcgtgtgtgtt |
430 |
Q |
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| T |
11006747 |
catgactaactcttttgtggagaaaattcaatgaaagagaacaatacatcgtgtgtgtt |
11006805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 11016006 - 11016064
Alignment:
| Q |
19 |
caattcatgaggcagatacaggccggtcttcatctccatctgtcttccttctctgcaat |
77 |
Q |
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| T |
11016006 |
caattcatgaggcagatacaggccggtcttcttctccatctgtcttcctcctctgcaat |
11016064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 11025018 - 11025079
Alignment:
| Q |
19 |
caattcatgaggcagatacaggccggtcttcatctccatctgtcttccttctctgcaattgt |
80 |
Q |
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| T |
11025018 |
caattcatgaggcaaatacaggtcggtcttcttctccatctgtcttcctcctatgcaattgt |
11025079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 309
Target Start/End: Original strand, 11025139 - 11025270
Alignment:
| Q |
162 |
ttaatccttctctggtactcttcaaaagttcattgttgagtactcttcctacatg-aatgtgatgctcaattctttaagtcaacgaacattatttatata |
260 |
Q |
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| T |
11025139 |
ttaatccttctttggtactcttcacaagttcattgttcaatactcttcctacatggaatgcgatg------------agtcaaagaacattat----ata |
11025222 |
T |
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| Q |
261 |
ttgcaaagggaaaagcagtaaacattgcgtgaaagccaacccaacatgt |
309 |
Q |
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| T |
11025223 |
ttgcaatgg-aaaagcagtaaaccttgcgtgaaagccaaaccaacatgt |
11025270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 11016133 - 11016185
Alignment:
| Q |
165 |
atccttctctggtactcttcaaaagttcattgttgagtactc-ttcctacatg |
216 |
Q |
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| T |
11016133 |
atccttctttggtactcttcacaagttcattgttgaatactctttcctacatg |
11016185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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