View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5476_high_5 (Length: 374)
Name: NF5476_high_5
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5476_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 12343726 - 12344081
Alignment:
| Q |
19 |
gaaagctcccgacgtcaaaaagccggcaaccgccaaaccaatgacaatcgtggccggaacaatcacggggctgaacaggatgaaaagcggggttgtcact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12343726 |
gaaagctcccgacgtcaaaaagccggcaactgccaaaccaatgacaatcgtggccggaacaatcacggggctgaacaggatgaaaagcggggttgtcact |
12343825 |
T |
|
| Q |
119 |
gcaagtccggtgagagttccgaggagagacagtccagcaagtgcaagtagtatgccaccaacaggaaggccggtaatcacggcaagaacttgagaggttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12343826 |
gcaagtccggtgagagttccgaggagagacagtccagcaagtgcaagtagtatgccaccaacaggaaggccggtaatcacggcaagaacttgagaggttg |
12343925 |
T |
|
| Q |
219 |
atggacttttgttgtctgagtaatgatgagttgcaactccaccaccgccttcataatgcaatggaggtgtaacagtatcgtaacggcgtgttgttgtgtg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
12343926 |
atggacttttgttgtctgagtaatgatgagttgcaactccaccaccgccttcataatgcaatggaggggtaatagtatcgtaacggcgtgttgttgtgtg |
12344025 |
T |
|
| Q |
319 |
aacttggatttggtgtggtgttgtacgatccgttgccattgattgaagtaaatgtt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12344026 |
aacttggatttggtgtggtgttgtacgatccgttgccattgattgaagtaaatgtt |
12344081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 15248337 - 15248554
Alignment:
| Q |
27 |
ccgacgtcaaaaagccggcaaccgccaaaccaatgacaatcgtggccggaacaatcacggggctgaacaggatgaaaagcggggttgtcactgcaagtcc |
126 |
Q |
| |
|
||||||| ||||||| | | || | ||| ||| ||||||| || ||||||| || || |||||||| |||| |||||| |||||||| || | | ||| |
|
|
| T |
15248337 |
ccgacgtaaaaaagctgacgacagtcaagccagtgacaatggtagccggaataagaacagggctgaagaggacgaaaagtggggttgttaccaccactcc |
15248436 |
T |
|
| Q |
127 |
ggtgagagttccgaggagagacagtccagcaagtgcaagtagtatgccaccaacaggaaggccggtaatcacggcaagaacttgagaggttgatggactt |
226 |
Q |
| |
|
|||||| ||||| || || | ||||||||||||||||| |||||| || ||| ||||||| ||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
15248437 |
ggtgagtgttccaagaaggtagagtccagcaagtgcaagcagtatgatgcctacatgaaggccagtaattatggcaagcacttgagaggttgatggactt |
15248536 |
T |
|
| Q |
227 |
ttgttgtctgagtaatga |
244 |
Q |
| |
|
| || ||||||| |||| |
|
|
| T |
15248537 |
cttttctctgagtcatga |
15248554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University