View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5476_high_7 (Length: 322)
Name: NF5476_high_7
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5476_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 4476923 - 4476657
Alignment:
| Q |
11 |
atcatcaaccagaatctctccgtctctcaaaccctagttttccttcatcaacttcacacttaagaaaaccaagaaccctcaattataactttttcaatat |
110 |
Q |
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| T |
4476923 |
atcatcaaccagaatctctccatctctcaaaccctagttttccttcatcaacttcacacttaagaaaaccaagaaccctcaattataactttttcaatat |
4476824 |
T |
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| Q |
111 |
ttgattatgagtctattagtagctcaaacacacatttcatccacttatctagttcaacttttaatatttcataatatcaacttaatttaaataaattcaa |
210 |
Q |
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| T |
4476823 |
ttgattatgagtccattagtagctcaaacacacatttcatccacttatctagtt-aacttttaatatttcataatatcaacttaatttaaataaattcaa |
4476725 |
T |
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| Q |
211 |
ttcctacaacactcattcgaagggtgaactcaagggaggttgaagagcaccttctcgtctagagccaa |
278 |
Q |
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| T |
4476724 |
ttcctacaacactcattcgaagggtgaactcaagggagattgaacagcaactcctcgtctagggccaa |
4476657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 2750170 - 2750114
Alignment:
| Q |
207 |
tcaattcctacaacactcattcgaagggtgaactcaagggaggttgaagagcacctt |
263 |
Q |
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| T |
2750170 |
tcaattcttacaacactcaatccaagggtgaacccaagggaggttgaactgcacctt |
2750114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 13292635 - 13292598
Alignment:
| Q |
202 |
taaattcaattcctacaacactcattcgaagggtgaac |
239 |
Q |
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| T |
13292635 |
taaattcaattcctacaacactcgttctaagggtgaac |
13292598 |
T |
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