View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5476_high_8 (Length: 251)
Name: NF5476_high_8
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5476_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30545436 - 30545676
Alignment:
| Q |
1 |
atattttaggtagaaaataacgataaccatatatttaatattgttttaactaattaattttgaaatggtccaatggatttgattaaactttctaataaat |
100 |
Q |
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| T |
30545436 |
atattttaggtagaaaataacgataaccatatatttaatattgttttaactaattaattttgaaatggtccaatggatttgattaaactttctaataaat |
30545535 |
T |
|
| Q |
101 |
tcacaagtgaagtctctgtaaaaaagaattatctataaacccatcaagtgaagttctttttctctataacttccgtaattacnnnnnnnnnaaagaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30545536 |
tcacaagtgaagtctctgtaaaaaagaattatctataaacccatcaagtgaagttctttttctctataacttccgtaattactttttttttaaagaagac |
30545635 |
T |
|
| Q |
201 |
aaaataaaatataatactgtcaaaccgcactctcccctatg |
241 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
30545636 |
aaaataaaatttaatactgtcaaaccgcactctcccctatg |
30545676 |
T |
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