View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5476_high_9 (Length: 248)
Name: NF5476_high_9
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5476_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12344080 - 12344315
Alignment:
| Q |
1 |
ttgagaacagaatttgaagatttatta-tgaatgaaagtagttgaagacttaacttatgtttttagttttatagaaaaaagtgatgtagttgtgtgatga |
99 |
Q |
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| T |
12344080 |
ttgagatcagaatttgaagatttatgaatgaatgaaagtagttgaagact-aacttatgtttttaattttatagaaaaaagtgatgtagttgtgtgatga |
12344178 |
T |
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| Q |
100 |
cacgtatgtgtgacatagtgagtaaggaggtttgcatgaggaacatgtatcaactacttggcctcggttaaatttatttatctttaaagtaaaaagagag |
199 |
Q |
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| T |
12344179 |
cacgtacgtgtgacatagtgagtaaggaggtttgcatgaggaacatgtatcaactacttggcctcgtttaaatttatttatctttaaagtaaaaagagag |
12344278 |
T |
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| Q |
200 |
tatatatttaatgaatgaaatgagttttgttttggat |
236 |
Q |
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| T |
12344279 |
tatatatttaatgaatgaaatgagttttgttttggat |
12344315 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 15248807 - 15248855
Alignment:
| Q |
110 |
tgacatagtgagtaaggaggtttgcatgaggaacatgtatcaactactt |
158 |
Q |
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| T |
15248807 |
tgacatggtgagtacgtaggtttgcatgaggaacgtgtatcaactactt |
15248855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 582431 - 582471
Alignment:
| Q |
106 |
tgtgtgacatagtgagtaaggaggtttgcatgaggaacatgt |
147 |
Q |
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| T |
582431 |
tgtgtgacatggtgagta-ggaggtttgcatgaggaacatgt |
582471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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