View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5476_low_1 (Length: 767)

Name: NF5476_low_1
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5476_low_1
NF5476_low_1
[»] chr3 (1 HSPs)
chr3 (20-743)||(35656549-35657286)


Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 20 - 743
Target Start/End: Original strand, 35656549 - 35657286
Alignment:
Q  20 acatacacaccacaaatccc-catccactctccatcgcttccttttaagacccctcaataaccagctatctcacaatccttacatgaatcatcattgttc 118  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  35656549 acatacacaccacaaatccctcatccactctccatcacttcctcttaagacccctcaataaccagctatctcacaatccttacacgaaccatcattgttc 35656648  T
Q  119 aatttaatccaaccactcgtagagggcttccatcctatcacgacaaacatcttccacaactctgttagccttaatcggcataacataatccttcacaact 218  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35656649 aattttatccaaccactcgtagagggcttccatcctatcacgacgaacatcttccacaaatctgttagccttaatcggcataacataatccttcacaact 35656748  T
Q  219 taccgtacatgttgtgccagataaacgacgacaataatctttctaatgcaactctttgttctcaagtccacaaactatgacacgccaaacaacattcaca 318  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35656749 taccgcacatgttgtgccagataaacgacgacaataacctttctaatgcaactctttgttcttaagtccacaaactatgacacgccaaacaacattcaca 35656848  T
Q  319 tttcaacctgctgcaccaccgagattaaactgaattcatattatctgataatatcatgagatacgatatctcaatcgctatcaacgaacacacctcttta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35656849 tttcaacctgctgcaccaccgagattaaactgaattcatattatctgataatatcatgagatacgatatctcaatcgttatcaacgaacacacctcttta 35656948  T
Q  419 ttgca-------------attaaatacttgagaatatgaaataatacaatgaaactaaagatat------aatgtgatagactgtctaatctagatcgaa 499  Q
    |||||             ||||||||   | || ||||||||||| |||| ||| |||||||||      |||||||||||| || ||||||||||||||    
T  35656949 ttgcaagtaaaaatgttcattaaataagagggactatgaaataattcaataaaattaaagatattttatcaatgtgatagaccgtataatctagatcgaa 35657048  T
Q  500 cgacctcaaatatcccaagtttgcgtggaatattattgaatgtacgtgagtcggtgagtcggtccattgtttttatccaatgtagcttacaccatatcca 599  Q
    |||||||| |||||||||||||||||| |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  35657049 cgacctcagatatcccaagtttgcgtgaaatattattgaatgtac--------gtgagtcggtccattgtttttatccaatgtagcttacaccatatcca 35657140  T
Q  600 actattttgttgctgcacagcattagcatagcgcatgagaaaacctgaacag--aatagttcatgcggaatcattatcttcatcgctctctctttcttcg 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||| |||||||||||||||    
T  35657141 actattttgttgctgcacagcattagcatagcgcatgagaaaacctgaacagtaaatagttcatgcggaatcatcatcttcatcactctctctttcttcg 35657240  T
Q  698 atccccaaattctgcgaactgcgaaccctaatttcacatttcttcg 743  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35657241 atccccaaattctgcgaactgcgaaccctaatttcacatttcttcg 35657286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University