View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5476_low_10 (Length: 293)

Name: NF5476_low_10
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5476_low_10
NF5476_low_10
[»] chr6 (19 HSPs)
chr6 (1-202)||(6197477-6197678)
chr6 (28-202)||(1391656-1391830)
chr6 (1-201)||(2300738-2300938)
chr6 (31-202)||(28002700-28002871)
chr6 (1-202)||(29076603-29076805)
chr6 (1-202)||(29111576-29111779)
chr6 (1-202)||(7051850-7052051)
chr6 (33-195)||(31895733-31895895)
chr6 (33-195)||(34759056-34759218)
chr6 (72-195)||(34773485-34773608)
chr6 (28-195)||(7497108-7497274)
chr6 (67-195)||(14262439-14262567)
chr6 (72-195)||(31067569-31067682)
chr6 (67-195)||(30385075-30385191)
chr6 (28-167)||(656997-657122)
chr6 (87-195)||(4200443-4200541)
chr6 (153-202)||(2238668-2238717)
chr6 (161-201)||(11113733-11113773)
chr6 (72-135)||(3848286-3848348)
[»] chr5 (26 HSPs)
chr5 (1-202)||(21147073-21147274)
chr5 (28-202)||(7016738-7016912)
chr5 (28-202)||(33656040-33656214)
chr5 (1-196)||(5272924-5273119)
chr5 (28-182)||(849180-849334)
chr5 (1-202)||(27458949-27459149)
chr5 (29-196)||(139307-139474)
chr5 (1-196)||(32157899-32158098)
chr5 (32-202)||(1152102-1152272)
chr5 (33-168)||(6460830-6460965)
chr5 (32-195)||(14000111-14000274)
chr5 (32-192)||(4550266-4550426)
chr5 (67-195)||(13926003-13926131)
chr5 (67-195)||(39852417-39852545)
chr5 (32-195)||(7947579-7947742)
chr5 (30-202)||(9689693-9689864)
chr5 (25-162)||(14465266-14465403)
chr5 (32-136)||(4240517-4240621)
chr5 (72-195)||(5949185-5949298)
chr5 (32-141)||(22746334-22746443)
chr5 (32-136)||(1461203-1461307)
chr5 (28-202)||(9220716-9220880)
chr5 (78-195)||(40013718-40013825)
chr5 (32-116)||(37013951-37014035)
chr5 (127-202)||(1511349-1511426)
chr5 (28-59)||(16894044-16894075)
[»] chr3 (62 HSPs)
chr3 (1-202)||(20498214-20498415)
chr3 (28-202)||(10139146-10139320)
chr3 (1-224)||(19253832-19254055)
chr3 (28-202)||(996086-996260)
chr3 (1-202)||(33807798-33808000)
chr3 (28-202)||(3206205-3206379)
chr3 (1-202)||(3999645-3999846)
chr3 (28-202)||(6589596-6589770)
chr3 (28-202)||(29448858-29449032)
chr3 (1-196)||(33996547-33996742)
chr3 (28-202)||(37820477-37820651)
chr3 (28-202)||(54625624-54625798)
chr3 (1-202)||(40246849-40247050)
chr3 (33-202)||(44762037-44762206)
chr3 (28-202)||(35337767-35337939)
chr3 (1-224)||(53929106-53929329)
chr3 (1-202)||(25418371-25418572)
chr3 (1-201)||(52114533-52114734)
chr3 (28-187)||(51699495-51699653)
chr3 (32-202)||(6035053-6035223)
chr3 (28-194)||(29030038-29030203)
chr3 (25-148)||(1440006-1440129)
chr3 (28-167)||(22057794-22057933)
chr3 (32-195)||(40897180-40897343)
chr3 (73-202)||(5825139-5825268)
chr3 (1-195)||(17946293-17946487)
chr3 (67-195)||(18749683-18749811)
chr3 (32-195)||(36674137-36674300)
chr3 (32-195)||(44906520-44906683)
chr3 (114-202)||(6131233-6131321)
chr3 (67-195)||(32580247-32580375)
chr3 (31-202)||(27899379-27899540)
chr3 (72-195)||(34484037-34484160)
chr3 (32-195)||(11431562-11431725)
chr3 (32-195)||(48379193-48379356)
chr3 (25-195)||(52810407-52810577)
chr3 (1-195)||(26107266-26107460)
chr3 (67-195)||(50903247-50903375)
chr3 (72-195)||(54628920-54629043)
chr3 (32-174)||(51737754-51737896)
chr3 (91-202)||(1439894-1440005)
chr3 (32-158)||(52618009-52618135)
chr3 (72-195)||(31646293-31646414)
chr3 (68-202)||(52079999-52080117)
chr3 (32-191)||(20833028-20833187)
chr3 (78-170)||(55235266-55235359)
chr3 (32-195)||(10728658-10728811)
chr3 (149-202)||(33807680-33807733)
chr3 (67-195)||(37454932-37455050)
chr3 (72-136)||(10660611-10660675)
chr3 (32-195)||(39038076-39038229)
chr3 (127-201)||(44276506-44276580)
chr3 (1-116)||(23753472-23753587)
chr3 (78-202)||(39842494-39842608)
chr3 (67-184)||(6975817-6975924)
chr3 (67-195)||(50762067-50762185)
chr3 (67-130)||(539476-539539)
chr3 (26-112)||(23535901-23535986)
chr3 (138-195)||(45862983-45863040)
chr3 (127-195)||(15492874-15492942)
chr3 (25-56)||(6131317-6131348)
chr3 (139-194)||(12103733-12103789)
[»] chr2 (34 HSPs)
chr2 (1-202)||(24776362-24776563)
chr2 (1-202)||(16269698-16269899)
chr2 (1-202)||(20605243-20605444)
chr2 (1-202)||(31170626-31170827)
chr2 (28-202)||(14198579-14198753)
chr2 (1-202)||(12407387-12407588)
chr2 (1-202)||(43847653-43847854)
chr2 (1-202)||(5093049-5093250)
chr2 (28-202)||(305467-305641)
chr2 (34-196)||(35317102-35317264)
chr2 (1-202)||(22551765-22551966)
chr2 (29-196)||(32125285-32125455)
chr2 (34-174)||(1789482-1789622)
chr2 (1-224)||(44765782-44765996)
chr2 (28-202)||(9120160-9120334)
chr2 (32-195)||(28844593-28844756)
chr2 (32-195)||(33135661-33135823)
chr2 (25-195)||(10657437-10657607)
chr2 (72-195)||(18177345-18177468)
chr2 (72-195)||(25288237-25288360)
chr2 (67-174)||(26788859-26788966)
chr2 (84-195)||(43078653-43078764)
chr2 (32-138)||(28740349-28740455)
chr2 (28-202)||(26601214-26601376)
chr2 (78-202)||(10125302-10125416)
chr2 (34-195)||(13833441-13833592)
chr2 (32-136)||(7026642-7026746)
chr2 (32-116)||(3574885-3574969)
chr2 (67-195)||(3463745-3463863)
chr2 (73-136)||(379016-379079)
chr2 (138-195)||(6224576-6224633)
chr2 (67-116)||(6224635-6224684)
chr2 (32-109)||(215320-215397)
chr2 (67-116)||(21370638-21370687)
[»] chr8 (36 HSPs)
chr8 (28-202)||(24501812-24501986)
chr8 (1-224)||(26374407-26374630)
chr8 (1-202)||(2704818-2705019)
chr8 (28-202)||(42938116-42938290)
chr8 (28-202)||(7506898-7507072)
chr8 (1-202)||(5576619-5576821)
chr8 (28-202)||(42735276-42735450)
chr8 (28-202)||(42937386-42937558)
chr8 (28-201)||(10392237-10392410)
chr8 (1-202)||(23115168-23115368)
chr8 (1-202)||(41479103-41479294)
chr8 (32-195)||(10295386-10295550)
chr8 (72-202)||(4403184-4403314)
chr8 (32-195)||(14782141-14782304)
chr8 (32-195)||(19717887-19718050)
chr8 (28-195)||(43166696-43166863)
chr8 (32-195)||(44725816-44725979)
chr8 (33-202)||(43959695-43959854)
chr8 (67-195)||(9288463-9288591)
chr8 (32-192)||(39467477-39467637)
chr8 (32-192)||(18958736-18958896)
chr8 (27-195)||(26856099-26856267)
chr8 (1-190)||(32711305-32711482)
chr8 (78-196)||(4950021-4950139)
chr8 (78-202)||(39189815-39189937)
chr8 (78-182)||(13478269-13478373)
chr8 (32-195)||(18305977-18306130)
chr8 (32-195)||(32497562-32497715)
chr8 (32-195)||(7466372-7466525)
chr8 (32-195)||(16362233-16362386)
chr8 (73-174)||(8410423-8410526)
chr8 (32-116)||(31623732-31623816)
chr8 (67-116)||(4031343-4031392)
chr8 (25-136)||(37857149-37857260)
chr8 (138-202)||(9770439-9770503)
chr8 (72-136)||(42305850-42305914)
[»] chr7 (60 HSPs)
chr7 (1-201)||(43581090-43581290)
chr7 (28-202)||(7718361-7718535)
chr7 (25-202)||(34695304-34695481)
chr7 (1-202)||(40996648-40996849)
chr7 (28-202)||(7719259-7719433)
chr7 (28-202)||(18914734-18914908)
chr7 (28-202)||(30440830-30441004)
chr7 (1-202)||(973191-973392)
chr7 (29-202)||(47914301-47914474)
chr7 (1-202)||(12893415-12893616)
chr7 (1-202)||(44343395-44343596)
chr7 (29-202)||(47879203-47879376)
chr7 (31-202)||(20275262-20275433)
chr7 (28-202)||(39219376-39219549)
chr7 (28-202)||(34009046-34009221)
chr7 (27-202)||(10068493-10068668)
chr7 (72-202)||(32142916-32143046)
chr7 (71-202)||(7113529-7113660)
chr7 (71-172)||(43679491-43679592)
chr7 (32-195)||(23101329-23101492)
chr7 (67-195)||(28342413-28342541)
chr7 (32-192)||(33382668-33382828)
chr7 (32-195)||(3022957-3023120)
chr7 (32-195)||(8675364-8675527)
chr7 (32-195)||(29614770-29614933)
chr7 (32-195)||(39784130-39784293)
chr7 (1-202)||(9179880-9180071)
chr7 (67-175)||(12963767-12963875)
chr7 (73-195)||(7993214-7993336)
chr7 (32-195)||(18838420-18838583)
chr7 (34-195)||(28034811-28034972)
chr7 (32-195)||(9882243-9882405)
chr7 (73-202)||(43187356-43187485)
chr7 (29-134)||(31638910-31639015)
chr7 (72-171)||(25805763-25805862)
chr7 (32-202)||(3797066-3797226)
chr7 (67-202)||(12740439-12740573)
chr7 (68-183)||(727587-727692)
chr7 (87-195)||(37972873-37972981)
chr7 (78-195)||(19810876-19810983)
chr7 (28-158)||(10676463-10676593)
chr7 (87-195)||(41827390-41827498)
chr7 (67-201)||(19251605-19251729)
chr7 (32-192)||(44256775-44256935)
chr7 (33-167)||(32883814-32883948)
chr7 (32-192)||(44121919-44122069)
chr7 (32-136)||(37327958-37328062)
chr7 (34-136)||(40460772-40460874)
chr7 (32-138)||(46405494-46405600)
chr7 (32-195)||(509687-509840)
chr7 (72-183)||(1470252-1470362)
chr7 (67-116)||(47066770-47066819)
chr7 (72-116)||(17001108-17001152)
chr7 (28-172)||(44623315-44623449)
chr7 (73-136)||(29585586-29585649)
chr7 (32-116)||(33892335-33892419)
chr7 (107-185)||(10617024-10617102)
chr7 (34-136)||(39028130-39028232)
chr7 (72-131)||(447854-447913)
chr7 (138-195)||(17001049-17001106)
[»] scaffold0400 (1 HSPs)
scaffold0400 (1-202)||(15033-15234)
[»] scaffold0365 (1 HSPs)
scaffold0365 (1-202)||(15676-15877)
[»] chr4 (64 HSPs)
chr4 (1-202)||(25331136-25331337)
chr4 (1-202)||(41881082-41881284)
chr4 (29-202)||(55302876-55303049)
chr4 (29-201)||(32950837-32951009)
chr4 (28-202)||(1044839-1045013)
chr4 (1-224)||(22202020-22202243)
chr4 (1-202)||(1112898-1113099)
chr4 (1-202)||(12112950-12113151)
chr4 (28-202)||(42786716-42786890)
chr4 (29-202)||(7007407-7007580)
chr4 (1-202)||(37046450-37046653)
chr4 (29-202)||(30009677-30009850)
chr4 (29-202)||(34228583-34228756)
chr4 (28-202)||(39479355-39479531)
chr4 (39-202)||(41320853-41321016)
chr4 (28-173)||(25446082-25446227)
chr4 (30-172)||(28541732-28541874)
chr4 (28-202)||(3436625-3436799)
chr4 (1-224)||(46635626-46635843)
chr4 (67-172)||(7249795-7249900)
chr4 (41-202)||(31314742-31314893)
chr4 (29-181)||(19740929-19741081)
chr4 (1-202)||(24130981-24131173)
chr4 (32-195)||(5441440-5441603)
chr4 (32-195)||(27768092-27768255)
chr4 (32-195)||(54341180-54341343)
chr4 (25-158)||(23464984-23465117)
chr4 (28-202)||(53275871-53276046)
chr4 (28-165)||(9163108-9163245)
chr4 (70-202)||(27454078-27454210)
chr4 (67-195)||(37828409-37828537)
chr4 (32-195)||(32322127-32322290)
chr4 (32-195)||(51320957-51321120)
chr4 (33-195)||(54853475-54853637)
chr4 (28-145)||(25504696-25504813)
chr4 (67-195)||(48261198-48261326)
chr4 (32-192)||(37915863-37916023)
chr4 (28-202)||(39307253-39307427)
chr4 (73-193)||(44770862-44770982)
chr4 (72-201)||(40537161-40537280)
chr4 (120-195)||(8711990-8712065)
chr4 (127-202)||(11090435-11090510)
chr4 (73-195)||(12913301-12913413)
chr4 (32-195)||(23987250-23987403)
chr4 (73-195)||(56445362-56445474)
chr4 (73-158)||(28371001-28371086)
chr4 (120-195)||(24736459-24736534)
chr4 (78-195)||(41725207-41725321)
chr4 (25-195)||(30967316-30967476)
chr4 (67-195)||(36479249-36479366)
chr4 (32-138)||(29649731-29649837)
chr4 (32-201)||(28483935-28484093)
chr4 (32-116)||(49834899-49834983)
chr4 (32-195)||(49501526-49501681)
chr4 (32-195)||(49507591-49507746)
chr4 (67-192)||(5800049-5800164)
chr4 (67-116)||(32684074-32684123)
chr4 (85-196)||(41581795-41581905)
chr4 (67-136)||(50018322-50018391)
chr4 (87-158)||(20021424-20021495)
chr4 (138-192)||(32684018-32684072)
chr4 (121-194)||(13400814-13400887)
chr4 (102-194)||(12193135-12193227)
chr4 (128-192)||(36727960-36728023)
[»] scaffold0151 (1 HSPs)
scaffold0151 (28-202)||(38605-38778)
[»] chr1 (48 HSPs)
chr1 (29-202)||(45760009-45760182)
chr1 (1-202)||(19451808-19452009)
chr1 (1-202)||(21222146-21222347)
chr1 (1-202)||(49198269-49198469)
chr1 (28-202)||(50192550-50192725)
chr1 (1-202)||(35279671-35279872)
chr1 (28-202)||(28824373-28824546)
chr1 (1-202)||(6304252-6304454)
chr1 (28-202)||(45535970-45536150)
chr1 (1-202)||(47654351-47654553)
chr1 (29-197)||(49418111-49418279)
chr1 (28-202)||(35679128-35679302)
chr1 (29-202)||(47780738-47780911)
chr1 (28-202)||(29556130-29556305)
chr1 (28-192)||(32588963-32589127)
chr1 (72-202)||(31572197-31572327)
chr1 (1-167)||(730147-730314)
chr1 (28-202)||(37014640-37014814)
chr1 (78-202)||(9577432-9577556)
chr1 (32-195)||(6312604-6312767)
chr1 (32-195)||(29396395-29396558)
chr1 (29-173)||(48524346-48524490)
chr1 (32-192)||(51701610-51701770)
chr1 (67-195)||(48177469-48177597)
chr1 (72-195)||(9322507-9322630)
chr1 (32-194)||(46328072-46328234)
chr1 (67-195)||(25612222-25612350)
chr1 (28-202)||(33025538-33025703)
chr1 (72-195)||(15835060-15835183)
chr1 (1-195)||(28387400-28387594)
chr1 (32-191)||(5495117-5495266)
chr1 (25-195)||(38536106-38536266)
chr1 (25-195)||(38558324-38558484)
chr1 (78-134)||(955826-955882)
chr1 (72-202)||(48668785-48668905)
chr1 (34-195)||(29219318-29219469)
chr1 (32-116)||(18798521-18798605)
chr1 (32-116)||(49230916-49231000)
chr1 (67-158)||(51085860-51085951)
chr1 (32-192)||(45272616-45272765)
chr1 (28-168)||(47784413-47784542)
chr1 (1-89)||(22183369-22183457)
chr1 (138-194)||(18798607-18798663)
chr1 (78-117)||(31622544-31622583)
chr1 (92-194)||(38319996-38320098)
chr1 (1-59)||(953818-953876)
chr1 (165-202)||(48524805-48524842)
chr1 (138-166)||(955876-955904)
[»] scaffold0004 (1 HSPs)
scaffold0004 (28-202)||(102128-102302)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-199)||(100217-100415)
[»] scaffold0113 (1 HSPs)
scaffold0113 (28-202)||(38895-39069)
[»] scaffold0276 (1 HSPs)
scaffold0276 (1-201)||(540-740)
[»] scaffold0543 (1 HSPs)
scaffold0543 (72-195)||(10637-10760)
[»] scaffold0110 (1 HSPs)
scaffold0110 (72-195)||(39624-39747)
[»] scaffold0054 (1 HSPs)
scaffold0054 (28-195)||(36914-37081)
[»] scaffold1504 (1 HSPs)
scaffold1504 (67-195)||(936-1063)
[»] scaffold0042 (1 HSPs)
scaffold0042 (72-195)||(58083-58206)
[»] scaffold0347 (1 HSPs)
scaffold0347 (127-202)||(14892-14967)
[»] scaffold0306 (1 HSPs)
scaffold0306 (32-136)||(13919-14023)
[»] scaffold0152 (1 HSPs)
scaffold0152 (32-136)||(21304-21408)
[»] scaffold0922 (1 HSPs)
scaffold0922 (32-132)||(4237-4337)
[»] scaffold0007 (1 HSPs)
scaffold0007 (81-168)||(199911-199998)
[»] scaffold0839 (1 HSPs)
scaffold0839 (96-174)||(3720-3798)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6197678 - 6197477
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  6197678 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 6197579  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6197578 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 6197479  T
Q  201 tg 202  Q
    ||    
T  6197478 tg 6197477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 1391656 - 1391830
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  1391656 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttggaaggattgtttaataaatcagattttgat 1391755  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||    
T  1391756 ggattttgtgggattttctagtgaaattttggcatgaaaaagtctttcatgaaaacatgagattccttaggattg 1391830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2300938 - 2300738
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||||||||||||||||||||||| |||||||       ||||| |||| || ||||||||||||||||||||    
T  2300938 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttgatcacttaaaaaaagtctactggtattgaaaatcattcaaatttcgaa 2300839  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2300838 ggattgtttaataaataagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 2300739  T
Q  201 t 201  Q
    |    
T  2300738 t 2300738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 28002700 - 28002871
Alignment:
Q  31 tggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatgga 130  Q
    |||||||||||||||||||||||||||||       |||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  28002700 tggtattcaatcaagactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaatttggaaggattgtttaataaatcagattttgatgga 28002799  T
Q  131 ttttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||    
T  28002800 ttttgtgaaattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgaagcttcttaggattg 28002871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29076603 - 29076805
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       || ||||||||||||||| ||| ||||||||||||        ||||||| || ||||||||||||||||||||||    
T  29076603 aagattctttgtcatttaaaaaaagtcttgtggtattcaatctagattcttaatcacttaaaaaaaagtctagtagtattcaaaatcattcaaatttcga 29076702  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagga 199  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  29076703 aggattgtttaataaatcagattttgatggattttataggattttctagtgaaattttagcatgaaaaaatctttcataaaaacatgagattttttagga 29076802  T
Q  200 ttg 202  Q
    |||    
T  29076803 ttg 29076805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29111576 - 29111779
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn--gtctagtggtgttcaaaatcattcaaatttcg 98  Q
    |||||||||||||||||       || ||||||||||||||| ||| ||||||||||||         ||||||| || |||||||||||||||||||||    
T  29111576 aagattctttgtcatttaaaaaaagtcttgtggtattcaatctagattcttaatcacttaaaaaaaaagtctagtagtattcaaaatcattcaaatttcg 29111675  T
Q  99 aaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagg 198  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||    
T  29111676 aaggattgtttaataaatcagattttgatggattttataggattttctagtgaaattttagcatgaaaaaatctttcataaaaacatgagattttttagg 29111775  T
Q  199 attg 202  Q
    ||||    
T  29111776 attg 29111779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 7051850 - 7052051
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||| |||||||||||||| |||||||       |||  ||| | |||||||||||||||||||||||    
T  7051850 aagattctttgtcatttaaaaaaagtcttgtggtatacaatcaagactcttcatcacttaaaaaaagtcgtgtgatattcaaaatcattcaaatttcgaa 7051949  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    ||||||||||||||||   ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| || ||| ||||||||||||||| ||    
T  7051950 ggattgtttaataaattggattttgatggattttgtaggattttctagtaaaattttagcatgaaaaagtttttcataaaatcatgagatttcttagaat 7052049  T
Q  201 tg 202  Q
    ||    
T  7052050 tg 7052051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 31895733 - 31895895
Alignment:
Q  33 gtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggatt 132  Q
    |||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  31895733 gtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggatt 31895832  T
Q  133 ttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||||||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  31895833 ttgtgggattttctagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 31895895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 34759218 - 34759056
Alignment:
Q  33 gtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggatt 132  Q
    |||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||| ||||||||||||||||||   |||||||||||||    
T  34759218 gtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttccaaggattgtttaataaattggattttgatggatt 34759119  T
Q  133 ttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||| ||||| ||||||| || |||||| ||||| ||||||| ||||||||||||    
T  34759118 ttgtgggattttgtagtgtaattttaacaagaaaaaatctttcatgaaaagatgagatttctt 34759056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 34773485 - 34773608
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||  |||| ||||||| || |||||||||    
T  34773485 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgcagtgtaattttaacaagaaaaagtc 34773584  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||| ||||||||||||    
T  34773585 tttcatgaaaagatgagatttctt 34773608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 7497108 - 7497274
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||| | || |||||||       |||| ||||| |||||||||||||||||||||||||| ||||||||||||   ||||||||    
T  7497108 ttgtggtattcaatcaagatttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggagtgtttaataaattggattttgat 7497207  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||| ||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  7497208 ggattttgt-ggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 7497274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 14262567 - 14262439
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || ||||    
T  14262567 gtcttgtggtattcaaaatcatttaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaa 14262468  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||| ||||||||    
T  14262467 aagtctttcatgaaaagatgggatttctt 14262439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 31067569 - 31067682
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| ||||| ||||||| || |||||||||    
T  31067569 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaat----------tggattttgtgggattttgtagtgtaattttaacaagaaaaagtc 31067658  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| || |||| ||||||||||||    
T  31067659 tttcataaaaagatgagatttctt 31067682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 30385191 - 30385075
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| ||||| ||||||| ||  | |    
T  30385191 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaat----------tggattttgtgggattttgtagtgtaattttaaca--aca 30385104  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  30385103 aagtctttcatgaaaagatgagatttctt 30385075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 656997 - 657122
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||| ||||||||||||||           |||||||||||  ||| ||||    
T  656997 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattctaaatcattcaaatt-----------tttaataaatctgattctgat 657085  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaa 167  Q
    |||||||||||||||   ||||||||||||| ||||||||    
T  657086 ggattttgtgggatt---tagtgaaattttatcatgaaaa 657122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 4200541 - 4200443
Alignment:
Q  87 attcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatg 186  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||          ||||| ||||||| || |||||||||||| ||||||| |||    
T  4200541 attcaaatttcgaaggattgtttaataaattggattttgatggattttg----------tagtgtaattttaacaagaaaaagtctttcatgaaaagatg 4200452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 2238668 - 2238717
Alignment:
Q  153 attttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||| |||||    
T  2238668 attttagtatgaaaaaatctttcatgaaaacatgagatttcttaagattg 2238717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 11113773 - 11113733
Alignment:
Q  161 atgaaaaagtcttttatgaaaacatgagatttcttaggatt 201  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  11113773 atgaaaacgtctttcatgaaaacatgagatttcttaggatt 11113733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 3848286 - 3848348
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttg 135  Q
    ||||| |||||||||||| |||||| ||| |||||||||||||||  ||||||| |||||||||    
T  3848286 gtggtattcaaaatcatttaaattttgaatgattgtttaataaattgaattttg-tggattttg 3848348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 21147073 - 21147274
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  21147073 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 21147172  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21147173 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 21147272  T
Q  201 tg 202  Q
    ||    
T  21147273 tg 21147274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 7016912 - 7016738
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||| |||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7016912 ttgtagtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 7016813  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  7016812 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcataaaaacatgagatttcttagaattg 7016738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 33656214 - 33656040
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||        |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33656214 ttgtggtattcaatcaagactcttaatcacttaaaaaaaatctaatggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 33656115  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  33656114 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaatatgagatttcttaggattg 33656040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5273119 - 5272924
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || || |||||||||||||||||||||||||| ||       |||||||||| |||||||||||||||||||||||    
T  5273119 aagattctttgtcatttaaaaaaagtcttatggtattcaatcaagactcttaatcatttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 5273020  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctta 196  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  5273019 tgattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcataaaaacatgagatttctta 5272924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 849180 - 849334
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       ||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  849180 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctaatggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 849279  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaa 182  Q
     |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  849280 agattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaa 849334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27459149 - 27458949
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||| |||||||||||||||||||||||||||       |||||||||| |||||||||||||| |||| |||    
T  27459149 aagattctttgtcatttaaaaaaagtcttgtagtattcaatcaagactcttaatcacttaaaaaa-gtctagtggtattcaaaatcattcagattttgaa 27459051  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| ||||||||||||    
T  27459050 ggattgtttaataaattagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaaatcattcatgaaaacatgatatttcttaggat 27458951  T
Q  201 tg 202  Q
    ||    
T  27458950 tg 27458949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 139307 - 139474
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||||||| ||||||||||       |||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  139307 tgtggtattcaatcaagacttttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaaccagattttgatg 139406  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctta 196  Q
    |||||||| |||||||| ||||||||||||  |||||||||||||| || ||||||||||||||||||    
T  139407 gattttgttggattttccagtgaaattttaatatgaaaaagtctttcataaaaacatgagatttctta 139474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 32158098 - 32157899
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       || |||||||||||||||||||| | |||||||||        |||||||||| ||||||||||||||||||||||    
T  32158098 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagacccctaatcacttaaaaaaaagtctagtggtattcaaaatcattcaaatttcga 32157999  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaa---agtcttttatgaaaacatgagatttctta 196  Q
    ||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||| |||||   ||||||| |||||||||||||||||||||    
T  32157998 aggattgtttaataaattagattttgacggattttgtgggattttctagtaaaattttagcacgaaaaaatagtctttcatgaaaacatgagatttctta 32157899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 1152272 - 1152102
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||| ||||||||||||||||   ||||||||||||    
T  1152272 ggtattcaatcaagactttttatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgagggattgtttaataaattggattttgatggat 1152173  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||||||||||||| |||||    
T  1152172 tttgtgggattttgtagtgtaattttaacaagaaaaagtcttttatgaaaagatgagatttcttaagattg 1152102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 6460830 - 6460965
Alignment:
Q  33 gtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggatt 132  Q
    |||||||||||||||||||||||| ||        ||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  6460830 gtattcaatcaagactcttaatcatttaaaaaaaatctagtggtattcaaaatcattcaaatttcgaaggtttgtttaataaatcagattttgatggatt 6460929  T
Q  133 ttgtgggattttctagtgaaattttagcatgaaaaa 168  Q
    ||| |||||||||||||||||||||| |||||||||    
T  6460930 ttgagggattttctagtgaaattttatcatgaaaaa 6460965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 14000274 - 14000111
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| ||||||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  14000274 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggat 14000175  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  14000174 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 14000111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 4550426 - 4550266
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  4550426 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 4550327  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||||||| ||||| ||||| ||||||| || |||| ||||||| ||||||| |||||||||    
T  4550326 tttgtggaattttgtagtgtaattttaacaagaaagagtctttcatgaaaagatgagattt 4550266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 13926003 - 13926131
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || ||||    
T  13926003 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaa 13926102  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| | ||||| |||| |||||||    
T  13926103 aagtctttcaagaaaagatgatatttctt 13926131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 39852417 - 39852545
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||| ||||| ||||||| || ||||    
T  39852417 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttactaaattggattttgatggattttatgggattttgtagtgtaattttaacaagaaa 39852516  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  39852517 aagtctttcatgaaaagatgagatttctt 39852545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 7947742 - 7947579
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| | | | |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  7947742 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgcgatattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 7947643  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||| ||||| ||||| ||||||| || |||||||||||| ||||||| | ||||||||||    
T  7947642 tttgtggaattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagaagagatttctt 7947579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 9689693 - 9689864
Alignment:
Q  30 gtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatgg 129  Q
    |||||||||||||||||||||| |||||||       |||| ||||| || ||||||||| |||||||||| |||||||| |||||| | ||||||||||    
T  9689693 gtggtattcaatcaagactcttcatcacttaaaaaaagtcttgtggtatttaaaatcatt-aaatttcgaatgattgtttgataaattagattttgatgg 9689791  T
Q  130 attttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||| |||| |||||||| || ||||||||  |||||||||||||| || ||||||| |||||||||| |||||    
T  9689792 attgtgtgagattttcttgtaaaattttattatgaaaaagtctttcataaaaacataagatttcttatgattg 9689864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 14465403 - 14465266
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    ||||| ||||||||||||||||||||| ||| |||       |||| ||||| ||||||||||||||||||||||| ||||||||||||||||  |||||    
T  14465403 gttttctggtattcaatcaagactcttcatcgcttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaagattgtttaataaatcggatttt 14465304  T
Q  125 gatggattttgtgggattttctagtgaaattttagcat 162  Q
    |||| ||||||||| |||||||||| | ||||||||||    
T  14465303 gatgaattttgtggaattttctagtaatattttagcat 14465266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 4240621 - 4240517
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  4240621 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 4240522  T
Q  132 tttgt 136  Q
    |||||    
T  4240521 tttgt 4240517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 5949185 - 5949298
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||||||||||||||||||||||||||          |||||||||  ||||||| ||||| ||||||| || |||||||||    
T  5949185 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaat----------tggattttgatggattttgtagtgtaattttaacaagaaaaagtc 5949274  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||| ||||||||||||    
T  5949275 tttcatgaaaagatgagatttctt 5949298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 22746334 - 22746443
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||| ||| || |||||||       |||| ||| | ||||||||||||||||||||||| |||||||||||||||  |||||||||||||    
T  22746334 ggtattcaatcaaaacttttcatcacttaaaaaaagtcttgtgatattcaaaatcattcaaatttcgaatgattgtttaataaattgaattttgatggat 22746433  T
Q  132 tttgtgggat 141  Q
    ||||||||||    
T  22746434 tttgtgggat 22746443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 1461307 - 1461203
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| | | | |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  1461307 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgcgctattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 1461208  T
Q  132 tttgt 136  Q
    |||||    
T  1461207 tttgt 1461203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 9220880 - 9220716
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||| |||||||||||||||||| |||||||       ||||  || | |||||||||||||||||||| |||||||||||||| ||| |             
T  9220880 ttgtgatattcaatcaagactctttatcacttaaaaaaagtcttatgatattcaaaatcattcaaatttctaaggattgtttaatgaatta--------- 9220790  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
     || ||||| ||||||| |||| |||||||| || ||||||||||||  ||||||||||| ||||||||||||||    
T  9220789 -gaatttgtaggattttatagtaaaattttaacacgaaaaagtctttcgtgaaaacatgatatttcttaggattg 9220716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 40013825 - 40013718
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat 177  Q
    ||||||||||||||||||||||||||||||||||| |||   ||||| ||||||||||          ||||| ||||||| || |||||||||||| ||    
T  40013825 ttcaaaatcattcaaatttcgaaggattgtttaatcaattggattttaatggattttg----------tagtgtaattttaacaagaaaaagtctttcat 40013736  T
Q  178 gaaaacatgagatttctt 195  Q
    ||||| ||||||||||||    
T  40013735 gaaaagatgagatttctt 40013718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 37013951 - 37014035
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    ||||||||||||||||| || |||||||       |||| | ||| ||||||||||||||||||||||||| |||||||||||||    
T  37013951 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgcggtattcaaaatcattcaaatttcgaagggttgtttaataaat 37014035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 1511426 - 1511349
Alignment:
Q  127 tggattttgtgggattttct-agtgaaattttagcatgaaaaag-tcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||| | |||||  |||| ||||||||||  |||||||||||||||| |||||| |||||||||    
T  1511426 tggattttgtgggatttttttagtgagtttttggcatgaaaaaaatcttttatgaaaacataagattttttaggattg 1511349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 16894075 - 16894044
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcactt 59  Q
    ||||||||||||||||||||||||||||||||    
T  16894075 ttgtggtattcaatcaagactcttaatcactt 16894044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 62)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 20498214 - 20498415
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  20498214 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 20498313  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20498314 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 20498413  T
Q  201 tg 202  Q
    ||    
T  20498414 tg 20498415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 10139320 - 10139146
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10139320 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 10139221  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10139220 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 10139146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 19253832 - 19254055
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  19253832 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 19253931  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19253932 ggattgtttaataaataagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 19254031  T
Q  201 tgnnnnnnncttttaaaattttac 224  Q
    ||       |||||||||||||||    
T  19254032 tgtttttttcttttaaaattttac 19254055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 996260 - 996086
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||| ||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  996260 ttgtggtattcaatcaagattcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 996161  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  996160 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 996086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 33808000 - 33807798
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||    
T  33808000 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaaagtctagtggtattcaaaatcattcaaatttcga 33807901  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagga 199  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33807900 aggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttagga 33807801  T
Q  200 ttg 202  Q
    |||    
T  33807800 ttg 33807798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 3206379 - 3206205
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3206379 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 3206280  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||    
T  3206279 ggattttgtgggattttctagtgaaattttagcaagaaaaagtctttcatgaaaacatgagatttcttatgattg 3206205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 3999846 - 3999645
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||    
T  3999846 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaaatctagtggtattcaaaatcattcaaatttcgaa 3999747  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  3999746 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagaatgaaaaagtctttcataaaaacatgagatttcttaggat 3999647  T
Q  201 tg 202  Q
    ||    
T  3999646 tg 3999645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 6589596 - 6589770
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||| ||       |||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  6589596 ttgtggtattcaatcaagactcttaatcatttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaagaattatttaataaatcagattttgat 6589695  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6589696 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 6589770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 29449032 - 29448858
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||| ||||||||||||||||| ||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29449032 ttgtgatattcaatcaagactctcaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 29448933  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  29448932 ggattttgtgggattttctagtaaaattttagcataaaaaagtctttcatgaaaacatgagatttcttaggattg 29448858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 33996742 - 33996547
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||        || |||||| |||||||||||||||||||||||    
T  33996742 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaaatccagtggtattcaaaatcattcaaatttcgaa 33996643  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctta 196  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33996642 ggattgtttaataaatcagattttgatggattttgagggattttctagtgaaattttagcatgaaaaagtcttttataaaaacatgagatttctta 33996547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 37820651 - 37820477
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||| ||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37820651 ttgtggtattcaatcaagattcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 37820552  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |||||    
T  37820551 ggattttgtgggattttccagtgaaattttagcatgaaaaagtctttcataaaaacatgagatttcttaagattg 37820477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 54625624 - 54625798
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||| |||||||||||||||||||||||||||       |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  54625624 ttgttgtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaattattcaaatttcgaaggattgtttaataaatcagattttgat 54625723  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  54625724 ggattttgtgggattttctagtgaaattttagcatgaaaaagtttttcatgaaaacatgagatttcttaagattg 54625798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 40246849 - 40247050
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       |||||||||||||||||||||||| ||||||| ||       |||||||||| ||||||||||||||||||| |||    
T  40246849 aagattctttgtcatttaaaaaaagttttgtggtattcaatcaagactattaatcagttaaaaaaagtctagtggtattcaaaatcattcaaatttggaa 40246948  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| |||    
T  40246949 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttggcatgaaaaagtctttcatgaaaacatgagattccttatgat 40247048  T
Q  201 tg 202  Q
    ||    
T  40247049 tg 40247050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 44762206 - 44762037
Alignment:
Q  33 gtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggatt 132  Q
    |||||||||||||||||||||||||||       |||||||||| || ||||| |||||| ||||||||||||||||||||||||| |||||||||||||    
T  44762206 gtattcaatcaagactcttaatcacttaaaaaaagtctagtggtatttaaaattattcaagtttcgaaggattgtttaataaatcagattttgatggatt 44762107  T
Q  133 ttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44762106 ttgtgggattttttagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaagattg 44762037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 35337767 - 35337939
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| |||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  35337767 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaaaaattcaaatttcgaaggattgtttaataaatcagattttgat 35337866  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  35337867 ggattttgtgggattttctagtgaaattttagcatgaaaaagt-tttcatgaaaacatgagattt-ttaggattg 35337939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 53929329 - 53929106
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||| |||| |||||    
T  53929329 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcatttaaatatcgaa 53929230  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
     ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  53929229 cgattgtttaataaataagattttgatggattttgtaggattttctagtgaaattttagcatgaaaaaatctttaatgaaaacatgagattttttaggat 53929130  T
Q  201 tgnnnnnnncttttaaaattttac 224  Q
    ||       |||||||||||||||    
T  53929129 tgtttttttcttttaaaattttac 53929106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25418371 - 25418572
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||| ||||||||||        ||||| ||| |||||||||||||||||||  ||    
T  25418371 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagacttttaatcacttacaaaaaatctagcggtattcaaaatcattcaaatttgaaa 25418470  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||||||    
T  25418471 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttggcatgaaaaagtatttcatgaaaacatgagattccttaggat 25418570  T
Q  201 tg 202  Q
    ||    
T  25418571 tg 25418572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 52114533 - 52114734
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       || ||||||||||||||||||||| ||||||||||        |||||||||| |||||||| ||||||||||||     
T  52114533 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagacttttaatcacttaaaaaaaagtctagtggtattcaaaataattcaaatttcgc 52114632  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagga 199  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  52114633 aggattgtttaataaatcagattttgatagattttgtggaattttctagtaaaattttagcatgaaaaaatcttttgtgaaaacatgagatttcttagga 52114732  T
Q  200 tt 201  Q
    ||    
T  52114733 tt 52114734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 51699653 - 51699495
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  51699653 ttgtggtattcaatcaagactcttaatcacttaaaaaaa-tctagtggtattcaaaatcattcaaatttcgaaggattggttaataaataagattttgat 51699555  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatga 187  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  51699554 gaattttgtgggattttctagtgaaattttagcatgaaaaaatctttcgtgaaaacatga 51699495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 6035223 - 6035053
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||| | || |||||||       |||| ||| | |||||||||||||||||||||||| | |||||||||||| | ||||||||||||    
T  6035223 ggtattcaatcaagatttttcatcacttaaaaaaagtctcgtgatattcaaaatcattcaaatttcgaagcaatgtttaataaattagattttgatggat 6035124  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| |||||    
T  6035123 tttgtgggattttctagtaaaattttagcatgaaaaagtctttcataaaaacatgagatttcttaagattg 6035053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 29030038 - 29030203
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||| ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  29030038 ttgtggtattcaatcaagactcttaatcacttaaaaaa-gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaatcagattttgat 29030136  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttct 194  Q
    ||||||||||| |||||||| |||||||||| ||||||    | |||||||||||||||||||||||    
T  29030137 ggattttgtggaattttctaatgaaattttaacatgaattttttttttatgaaaacatgagatttct 29030203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 1440129 - 1440006
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    |||||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  1440129 gttttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttccaaggattgtttaataaatcagatttt 1440030  T
Q  125 gatggattttgtgggattttctag 148  Q
    |||||||||| |||||||||||||    
T  1440029 gatggattttatgggattttctag 1440006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 22057794 - 22057933
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||| |||||||||||| |||||||        ||||||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  22057794 ttgtggtattccatcaagactcttgatcacttaaaaaaaatctagtggtatttaaaatcattcaaatttcgatggattgtttaataaatcagattttgat 22057893  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaa 167  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  22057894 ggattttgtgggattttctagtgaaattttaacatgaaaa 22057933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 40897180 - 40897343
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       ||||  |||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  40897180 ggtattcaatcaagacttttcatcacttaaaaaaagtcttatggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 40897279  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  40897280 tttgtgggattttatagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 40897343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 5825139 - 5825268
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtct 172  Q
    |||| ||||||||||||||||||| |||||||||||||||||||   |||||||| |||||||||||||||| |||||||||| ||||||||||||| ||    
T  5825139 tggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatagattttgtgggattttttagtgaaattctagcatgaaaaaggct 5825238  T
Q  173 tttatgaaaacatgagatttcttaggattg 202  Q
    || ||||||||||||||||||||| |||||    
T  5825239 ttcatgaaaacatgagatttcttatgattg 5825268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 17946293 - 17946487
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||| ||||||||||||||||| || |||||||       |||| ||| | |||||||||||||||||||| ||    
T  17946293 aagattctttgtcattttaaaaaagtcttgaggtattcaatcaagacttttcatcacttaaaaaaagtctcgtgatattcaaaatcattcaaatttcaaa 17946392  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  17946393 ggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 17946487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 18749683 - 18749811
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || ||||    
T  18749683 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaa 18749782  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  18749783 aagtctttcatgaaaagatgagatttctt 18749811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 36674300 - 36674137
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| ||||||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  36674300 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggat 36674201  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  36674200 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 36674137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 44906683 - 44906520
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||| ||    
T  44906683 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatgaat 44906584  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || ||||| |||||| ||||||| ||||||||||||    
T  44906583 tttgtgggattttgtagtgtaattttaacaagaaaatgtctttcatgaaaagatgagatttctt 44906520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 6131321 - 6131233
Alignment:
Q  114 aatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6131321 aatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 6131233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 32580247 - 32580375
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||| ||||| ||||||| || ||||    
T  32580247 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgagggattttgtagtgtaattttaacaagaaa 32580346  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  32580347 aagtctttcatgaaaagatgagatttctt 32580375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 27899379 - 27899540
Alignment:
Q  31 tggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatgga 130  Q
    |||||||||||||||||||||  ||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||||          ||    
T  27899379 tggtattcaatcaagactctttgtcatttaaaaaaagtctggtggtattcaaaatcattcaaatttcgaaggattgtttaataaatca----------ga 27899468  T
Q  131 ttttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||    
T  27899469 ttttgtaggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgaaatttcttatgattg 27899540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 34484160 - 34484037
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || |||||| ||    
T  34484160 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaaaaatc 34484061  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||| ||||||||||||    
T  34484060 tttcatgaaaagatgagatttctt 34484037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 11431562 - 11431725
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||| ||||||||||||||||||||||||||   |||||| |||||    
T  11431562 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcatttaaatttcgaaggattgtttaataaattggattttggtggat 11431661  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  11431662 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 11431725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 48379193 - 48379356
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||| ||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  48379193 ggtattcaatctagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattgaattttgatggat 48379292  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| |||||||  | ||||| |||||| ||||||| || |||||||||    
T  48379293 tttgtgggattttgtagtgtaattttaataagaaaatgtctttcatgaaaagatcagatttctt 48379356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 52810407 - 52810577
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    |||||| ||||||||||||||||| || |||| ||       |||| ||||| ||||||||||||||||||| ||| |||||||||||||||  ||||||    
T  52810407 gttttgaggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaattttgaatgattgtttaataaattgaatttt 52810506  T
Q  125 gatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||||||||||| ||| | ||||||| || |||||| ||||| ||||||| ||||||||||||    
T  52810507 gatggattttgtgggattttgtagcgtaattttaacaagaaaaaatctttcatgaaaagatgagatttctt 52810577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 26107266 - 26107460
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||| ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||    
T  26107266 aagattctttgtcattttaaaaaagtcttgaggtattcaatcaagacttttcatcaattaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaa 26107365  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||||||   |||||||||||||||||| |||||| ||||| ||||||| || |||||||| ||| || |||| ||||||||||||    
T  26107366 ggattgtttaataaattggattttgatggattttgtgtgattttgtagtgtaattttaacaagaaaaagtatttcataaaaagatgagatttctt 26107460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 50903375 - 50903247
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| ||||||||||||||||||  |||||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || ||||    
T  50903375 gtcttgtggtattcaaaatcattcaaattaagaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaa 50903276  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    || ||||||||||||| ||||||||||||    
T  50903275 aaatcttttatgaaaatatgagatttctt 50903247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 54628920 - 54629043
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || |||||||||    
T  54628920 gtggtattcaaaatcattcaaatttcaaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaaaagtc 54629019  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| || |||| ||||||||||||    
T  54629020 tttcataaaaagatgagatttctt 54629043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 51737896 - 51737754
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  51737896 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 51737797  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttt 174  Q
    ||||||||||||| | ||| ||||||| || ||||||||||||    
T  51737796 tttgtgggattttgttgtgtaattttaacaagaaaaagtcttt 51737754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 1440005 - 1439894
Alignment:
Q  91 aaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagat 190  Q
    |||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||| | |||||||||||||| | |||||||||||||    
T  1440005 aaatttggaaggattgtttaataaattagattttgatagattttgtgggattttctagtaaaattttggtatgaaaaagtctttcacgaaaacatgagat 1439906  T
Q  191 ttcttaggattg 202  Q
    || |||||||||    
T  1439905 tttttaggattg 1439894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 52618135 - 52618009
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  52618135 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 52618036  T
Q  132 tttgtgggattttctagtgaaatttta 158  Q
    ||||||||||||| ||||| |||||||    
T  52618035 tttgtgggattttgtagtgtaatttta 52618009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 31646414 - 31646293
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||   ||||||||||||||||||||||||| ||||| ||||||| || |||||||||    
T  31646414 gtggtattcaaaatcattcaaatttcgaaagattgtttaatgaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaaaagtc 31646315  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||  ||||||||||||    
T  31646314 tttcatgaaa--atgagatttctt 31646293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 52079999 - 52080117
Alignment:
Q  68 tctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaa 167  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||          ||||||||||||||||||| |||||||||||||||||||    
T  52079999 tctagtggtattcaaaatcattcaaattttgaaggattgtttaataaatca----------gattttgtgggattttctaatgaaattttagcatgaaaa 52080088  T
Q  168 agtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||      ||||||||||||||||||||||||||    
T  52080089 agt------tgaaaacatgagatttcttaggattg 52080117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 20833028 - 20833187
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||| | || |||||||       |||| ||||| ||||||||||||||||||  |||||||||||||||||||   ||||||||||||    
T  20833028 ggtattcaatcaagaattttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaattcggaaggattgtttaataaattggattttgatggat 20833127  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatt 191  Q
    |||||| |||||  ||||| ||||||| || |||||||| ||| ||||||| || |||||    
T  20833128 tttgtgagatttattagtgtaattttaacaagaaaaagtatttcatgaaaagataagatt 20833187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 55235266 - 55235359
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatgga-ttttgtgggattttctagtgaaattttagcatgaaaaagt 170  Q
    ||||||||||||||||||||||| |||||||||||||||    |||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  55235266 ttcaaaatcattcaaatttcgaaagattgtttaataaattggtttttgatggatttttgtgggattttctaatgaaattttagcataaaaaagt 55235359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 10728811 - 10728658
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| || |||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  10728811 ggtattcaatcaagacttttcatcacttacaaaaagtcttgtggtatttaaaatcattcaaatttggaaggattgtttaataaattggattttgatggat 10728712  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||          ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  10728711 tttg----------tagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 10728658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 33807733 - 33807680
Alignment:
Q  149 tgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33807733 tgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 33807680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 37454932 - 37455050
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||||||          || ||||||||||||||| ||||| ||||||| || ||||    
T  37454932 gtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaat----------tgaattttgtgggattttgtagtgtaattttaacaagaaa 37455021  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||| ||| ||||||| ||||||||||||    
T  37455022 aagtatttcatgaaaagatgagatttctt 37455050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 10660611 - 10660675
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgt 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  10660611 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgt 10660675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 39038076 - 39038229
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| | |||||||||||||||||||||| ||||||||||||||   ||||||||||||    
T  39038076 ggtattcaatcaagacttttcatcactttaaaaaagtcttgtggtatccaaaatcattcaaatttcgaagaattgtttaataaattggattttgatggat 39038175  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||          |||| ||||||| || |||||||||||| || |||| ||||||||||||    
T  39038176 tttgt----------agtgtaattttaacaagaaaaagtctttcataaaaagatgagatttctt 39038229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 44276506 - 44276580
Alignment:
Q  127 tggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggatt 201  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||| ||||| ||||||||||| || |||||    
T  44276506 tggattttgtgggattttctagtgaaattttaacaagaaaaaatctttcatgaagacatgagattttttgggatt 44276580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 23753587 - 23753472
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||| ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||    
T  23753587 aagattctttgtcattttaaaaaagtcttgaggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaa 23753488  T
Q  101 ggattgtttaataaat 116  Q
    ||||||||||||||||    
T  23753487 ggattgtttaataaat 23753472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 39842608 - 39842494
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat 177  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||||| ||||||||          || || ||||||| || |||||||||||| ||    
T  39842608 ttcaaaatcattcaaatttcgaagaattgtttaataaattagattttgacggattttg----------taatgtaattttaacaagaaaaagtctttcat 39842519  T
Q  178 gaaaacatgagatttcttaggattg 202  Q
    ||||| |||||||||||| ||||||    
T  39842518 gaaaagatgagatttcttgggattg 39842494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 6975817 - 6975924
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||| ||| |||| |||||          |||| |||||||||||||||||| |||||| |||||||||    
T  6975817 gtcttgtggtattcaaaatcattcaaatttcgaagaattatttactaaat----------tggaatttgtgggattttctagtaaaatttgagcatgaaa 6975906  T
Q  167 aagtcttttatgaaaaca 184  Q
     ||||||| |||||||||    
T  6975907 cagtctttcatgaaaaca 6975924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 50762185 - 50762067
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| ||||||||||||| ||||||||| |||||||| ||||||   ||||||||||||||||          ||||| ||||||| || ||||    
T  50762185 gtcttgtggtattcaaaatcattctaatttcgaatgattgtttgataaattggattttgatggattttg----------tagtgtaattttaacaagaaa 50762096  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  50762095 aagtctttcatgaaaagatgagatttctt 50762067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 539539 - 539476
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatgga 130  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||||   |||||||||||    
T  539539 gtcttgtggtattcaaaatcattcaaatttcgaaggattatttaataaattggattttgatgga 539476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 23535986 - 23535901
Alignment:
Q  26 ttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaat 112  Q
    |||||||| |||||||||| |||||| |||||||       |||| ||||| ||||||||||||||||||| ||||||| |||||||    
T  23535986 ttttgtggcattcaatcaa-actcttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttagaaggatcgtttaat 23535901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 45862983 - 45863040
Alignment:
Q  138 ggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  45862983 ggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 45863040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 15492942 - 15492874
Alignment:
Q  127 tggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||| |||| |||||||||||||||| || |||||| ||||| |||||  ||| |||||||||    
T  15492942 tggattttgtaggatattctagtgaaattttaacaagaaaaaatctttcatgaagtcataagatttctt 15492874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 6131348 - 6131317
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatca 56  Q
    ||||||||||||||||||||||||||||||||    
T  6131348 gttttgtggtattcaatcaagactcttaatca 6131317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 12103733 - 12103789
Alignment:
Q  139 gattttctagtgaaattttagcatgaaaaagtcttttatgaaaaca-tgagatttct 194  Q
    |||||||||||||||||||| || ||| |||||||| ||||| ||| ||||||||||    
T  12103733 gattttctagtgaaattttaacaagaataagtctttcatgaagacattgagatttct 12103789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 24776362 - 24776563
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  24776362 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 24776461  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24776462 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 24776561  T
Q  201 tg 202  Q
    ||    
T  24776562 tg 24776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 16269698 - 16269899
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  16269698 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 16269797  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16269798 ggattgtttaataaatcagattttgatggattttgtgggattttatagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 16269897  T
Q  201 tg 202  Q
    ||    
T  16269898 tg 16269899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 20605243 - 20605444
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||| ||||||||||    
T  20605243 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattaaaatttcgaa 20605342  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20605343 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 20605442  T
Q  201 tg 202  Q
    ||    
T  20605443 tg 20605444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 31170827 - 31170626
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||| ||    
T  31170827 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttccaa 31170728  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31170727 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 31170628  T
Q  201 tg 202  Q
    ||    
T  31170627 tg 31170626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 14198753 - 14198579
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       ||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14198753 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtccagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 14198654  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  14198653 ggattttgtgggattttctagtgaaattttagcatgaaaaattctttcatgaaaacatgagatttcttaggattg 14198579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 12407387 - 12407588
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||| ||||||||||||||||       |||||||||| ||||||||||||||||||| |||    
T  12407387 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcgagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaattttgaa 12407486  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||    
T  12407487 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttaccatgaaaaagtctttcatgaaaacatgagatttcttaagat 12407586  T
Q  201 tg 202  Q
    ||    
T  12407587 tg 12407588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 43847653 - 43847854
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       ||||||| || |||||||||||||||||||||||    
T  43847653 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagttgtattcaaaatcattcaaatttcgaa 43847752  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  43847753 ggattgtttaataaatcagaatttgatggattttgtggaattttctagtgaaattttagcatgaaaaagtctgtcatgaaaacatgagatttcttaggat 43847852  T
Q  201 tg 202  Q
    ||    
T  43847853 tg 43847854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 5093250 - 5093049
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||||||||||||||||||| |||||||||||       ||||||| || ||||||||||||||||||| |||    
T  5093250 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagacgcttaatcacttaaaaaaagtctagtagtattcaaaatcattcaaattttgaa 5093151  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5093150 ggattgtttaataaatcagattttgatggattttgtgggattttctaatgaaattttagcatgaaaaagtctttcataaaaacatgagatttcttaggat 5093051  T
Q  201 tg 202  Q
    ||    
T  5093050 tg 5093049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 305641 - 305467
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |||| |||    
T  305641 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaattttgaatgattgtttaataaatcagatttcgat 305542  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  305541 ggattttgtgagattttctagtgaaattttagaatgaaaaagtctttcatgaaaacatgagatttcttaggattg 305467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 35317102 - 35317264
Alignment:
Q  34 tattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattt 133  Q
    ||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35317102 tattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattt 35317201  T
Q  134 tgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctta 196  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  35317202 tgtggaattttctagtgaaattttagcatgaaaaagtctttcatgaaaacataagatttctta 35317264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 22551966 - 22551765
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||| ||||||||||       |||||||||| |||||||| ||||||||||||||    
T  22551966 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagacttttaatcacttaaaaaaagtctagtggtattcaaaattattcaaatttcgaa 22551867  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
     ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||    
T  22551866 tgattgtttattaaattaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtatttcatgaaaacatgagatttcttatgat 22551767  T
Q  201 tg 202  Q
    ||    
T  22551766 tg 22551765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 32125285 - 32125455
Alignment:
Q  29 tgtggtattcaatcaagactcttaat---cacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttg 125  Q
    ||||||||||||||||||||||||||   || ||       ||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32125285 tgtggtattcaatcaagactcttaatgatcatttaaaaaaagtcaagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttg 32125384  T
Q  126 atggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctta 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||    
T  32125385 atggattttgtgggattttctagtaaaattttagcatgaaaaagtctttcatgaaaatatgagatttctta 32125455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 1789482 - 1789622
Alignment:
Q  34 tattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattt 133  Q
    ||||||||||| ||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1789482 tattcaatcaaaactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattt 1789581  T
Q  134 tgtgggattttctagtgaaattttagcatgaaaaagtcttt 174  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  1789582 tgtgggattttctaatgaaattttagcatgaaaaagtcttt 1789622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44765782 - 44765996
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||| ||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  44765782 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcgagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 44765881  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
     ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||         ||| |||||||||||||||||||||||||    
T  44765882 agattgtttaataaataagattttgatggattttgtgggattttctagtgaaattttagcat---------tttcatgaaaacatgagatttcttaggat 44765972  T
Q  201 tgnnnnnnncttttaaaattttac 224  Q
    ||       |||||||||||||||    
T  44765973 tgtttttttcttttaaaattttac 44765996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 9120160 - 9120334
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||| ||||||||||||| ||||||||||||        ||||||| | |||||||||||||| ||||  |||||||||||||||||| | ||||||||    
T  9120160 ttgtgttattcaatcaagattcttaatcacttaaaaaaaatctagtgatattcaaaatcattcagattttaaaggattgtttaataaattagattttgat 9120259  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||    
T  9120260 ggattttgtgggattttctagtgaaattttagtatggaaaaatctttcatgaaaacatgagatttcttaggattg 9120334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 28844593 - 28844756
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  28844593 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattagattttgatggat 28844692  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||| ||||| ||||| |||||||  | |||||||||||| || |||| ||||||||||||    
T  28844693 tttgtggaattttgtagtgtaattttaataagaaaaagtctttcataaaaagatgagatttctt 28844756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 33135661 - 33135823
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  33135661 ggtattcaatcaagacttttcatcacttaaaaaaagtctcgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 33135760  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| || |||| ||||||||||||    
T  33135761 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcat-aaaaaatgagatttctt 33135823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 10657437 - 10657607
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    |||||| ||||||||||||||||| || |||||||       |||| ||||| ||||||||||||||||||||||| |||||||||||||||   |||||    
T  10657437 gttttgaggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggatttt 10657536  T
Q  125 gatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||||||||||| ||||| ||||||| || |||||||| ||| ||||||| |||| |||||||    
T  10657537 gatggattttgtgggattttgtagtgtaattttaacaagaaaaagtatttcatgaaaagatgaaatttctt 10657607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 18177345 - 18177468
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||| ||||| ||||||| || |||||||||    
T  18177345 gtggtattcaaaatcattcaaatttcgaaggattgtttaattaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaaaagtc 18177444  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| || |||| ||||||||||||    
T  18177445 tttaataaaaagatgagatttctt 18177468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 25288237 - 25288360
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||| ||||| ||||||| || || || |||    
T  25288237 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatgaattttgtgggattttgtagtgtaattttaacaagagaacgtc 25288336  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||| ||||||||||||    
T  25288337 tttcatgaaaagatgagatttctt 25288360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 26788859 - 26788966
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || ||||    
T  26788859 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaa 26788958  T
Q  167 aagtcttt 174  Q
    ||||||||    
T  26788959 aagtcttt 26788966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 43078653 - 43078764
Alignment:
Q  84 atcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaac 183  Q
    ||||||||||||||||| |||||||||||||||   ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| || ||||     
T  43078653 atcattcaaatttcgaatgattgtttaataaattggattttcatggattttgtgggattttatagtgtaattttaacatgaaaaagtctttcataaaaag 43078752  T
Q  184 atgagatttctt 195  Q
    || |||||||||    
T  43078753 ataagatttctt 43078764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 28740455 - 28740349
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  28740455 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 28740356  T
Q  132 tttgtgg 138  Q
    |||||||    
T  28740355 tttgtgg 28740349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 26601376 - 26601214
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||| |||||||||||||||||||||||||||       |||  ||||| ||||||||||||||||||||||| | |||||||||||||||             
T  26601376 ttgtagtattcaatcaagactcttaatcacttaaaaaaagtcacgtggtattcaaaatcattcaaatttcgaatgtttgtttaataaatca--------- 26601286  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
     ||||||||||||||||||||||||| |||| |||  |||||| ||| |||||||||| |||||| |||||||||    
T  26601285 -gattttgtgggattttctagtgaaactttaacat-taaaagtttttgatgaaaacat-agattttttaggattg 26601214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 10125416 - 10125302
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat 177  Q
    |||||||||||||||||||| ||||||||||||||||||          || ||||||||||||||| ||||||||||||| || |||||||||||| ||    
T  10125416 ttcaaaatcattcaaatttcaaaggattgtttaataaat----------tgaattttgtgggattttttagtgaaattttaacaagaaaaagtctttcat 10125327  T
Q  178 gaaaacatgagatttcttaggattg 202  Q
     |||||| ||||||||||| |||||    
T  10125326 aaaaacacgagatttcttaagattg 10125302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 13833592 - 13833441
Alignment:
Q  34 tattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattt 133  Q
    ||||||||||||||| || |||||||       ||||  |||| ||||||||||||||||||| |||||||||||||||||||          |||||||    
T  13833592 tattcaatcaagacttttcatcacttaaaaaaagtcttctggtattcaaaatcattcaaattttgaaggattgtttaataaat----------tggattt 13833503  T
Q  134 tgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||| ||||| ||||||| || |||||||||||| |||| || ||||||||||||    
T  13833502 tgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgacaagatgagatttctt 13833441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 7026642 - 7026746
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  7026642 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 7026741  T
Q  132 tttgt 136  Q
    |||||    
T  7026742 tttgt 7026746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 3574885 - 3574969
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    ||||||||||||||||| || |||||||       |||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  3574885 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtgatattcaaaatcattcaaatttcgaaggattgtttaataaat 3574969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 3463745 - 3463863
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| || |||||||||||| |||| ||||||||||||||||||          |||||||||  ||||||| ||||| ||||||| || ||||    
T  3463745 gtcttgtggtatttaaaatcattcaattttcaaaggattgtttaataaat----------tggattttgatggattttgtagtgtaattttaacaagaaa 3463834  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  3463835 aagtctttcatgaaaatatgagatttctt 3463863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 379016 - 379079
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgt 136  Q
    |||| ||||||||||||||||||| |||||||||||||||||||   |||||||| ||||||||    
T  379016 tggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatagattttgt 379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 6224633 - 6224576
Alignment:
Q  138 ggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  6224633 ggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 6224576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 6224684 - 6224635
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    |||| ||||| |||||||| ||||||||||||||||||| ||||||||||    
T  6224684 gtcttgtggtattcaaaattattcaaatttcgaaggattatttaataaat 6224635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 215397 - 215320
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgttt 109  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||| ||| |||||||||||    
T  215397 ggtattcaatcaagacttttcatcacttaaaaaaagtctcgtggtattcaaaatcattcaaacttcaaaggattgttt 215320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 21370687 - 21370638
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    |||| ||||| ||||||||||||||||||| |||| ||||||| ||||||    
T  21370687 gtcttgtggtattcaaaatcattcaaattttgaagtattgtttgataaat 21370638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 24501986 - 24501812
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24501986 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 24501887  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24501886 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 24501812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26374630 - 26374407
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  26374630 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 26374531  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26374530 ggattgtttaataaataagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 26374431  T
Q  201 tgnnnnnnncttttaaaattttac 224  Q
    ||       |||||||||||||||    
T  26374430 tgtttttttcttttaaaattttac 26374407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2705019 - 2704818
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  2705019 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 2704920  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  2704919 tgattgtttaataaatcaaattttgatggattttgtgggattttctagtgatattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 2704820  T
Q  201 tg 202  Q
    ||    
T  2704819 tg 2704818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 42938290 - 42938116
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42938290 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 42938191  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  42938190 ggattttgtgggattttctagtgaaattttagcctgaaaaagtctttcatgaaaacatgagatttcttaggattg 42938116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 7507072 - 7506898
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  7507072 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaaccattcaaattttgaaggattgtttaataaatcagattttgat 7506973  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  7506972 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgtaaacatgagatttcttaggattg 7506898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 5576821 - 5576619
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||        ||| |||||| ||||||||||||||||||||||    
T  5576821 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaaagtcaagtggtattcaaaatcattcaaatttcga 5576722  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagga 199  Q
    || ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5576721 agaattgtttaataaaccagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagga 5576622  T
Q  200 ttg 202  Q
    |||    
T  5576621 ttg 5576619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 42735450 - 42735276
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||||||||||||| |||||||||||||||||       |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  42735450 ttgtggtattcaattaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaagtattgtttaataaatcagattttgat 42735351  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  42735350 ggattttgtgggattttctagtgaaattttagcttgaaaaagtctttcataaaaacatgagatttcttaggattg 42735276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 42937386 - 42937558
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||||||||||||||  |||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42937386 ttgtggtattcaatc--gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 42937483  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  42937484 ggattttgtgggattttctagtgaaattttagcattaaaaagtctttcatgaaaacatgagatttcttatgattg 42937558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 10392410 - 10392237
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||| ||||||||||||||| ||||||||||       |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  10392410 ttgtgatattcaatcaagacttttaatcacttaagaaaagtctagtggtattcagaatcattcaaatttcgaaggattgtttaataaatcagattttgat 10392311  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  10392310 ggattttgtgggattttctagtgaaattttagcatgaaaaaatctttcatgaaaacatgagatttattaggatt 10392237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 23115368 - 23115168
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||| |||||||||||| |||    
T  23115368 aagattctttgtcatttaaaaaatgtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaa-tcattcaaatttggaa 23115270  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  23115269 ggattgtttaataaatcagattttgatggattttgtgggattttctaatgaaattttggcatgaaaaagtctttcatgaaaacatgagattccttaggat 23115170  T
Q  201 tg 202  Q
    ||    
T  23115169 tg 23115168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 41479103 - 41479294
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       ||||| |||| |||||||||||||||||||||||    
T  41479103 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctaatggtattcaaaatcattcaaatttcgaa 41479202  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
     |||||||||||||||||          ||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  41479203 tgattgtttaataaatca----------gattttgtgggattttctagtaaaattttagcatgaaaaaatctttcatgaaaacatgagatttcttaggat 41479292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 10295550 - 10295386
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatgga- 130  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||     
T  10295550 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 10295451  T
Q  131 ttttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  10295450 ttttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 10295386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 4403184 - 4403314
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||| ||||| ||||||| || |||||||||    
T  4403184 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattgggttttgatggattttgtgggattttttagtgtaattttaacaagaaaaagtc 4403283  T
Q  172 ttttatgaaaacatgagatttcttaggattg 202  Q
    ||| ||||||| |||||||||||| ||||||    
T  4403284 tttcatgaaaatatgagatttcttgggattg 4403314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 14782304 - 14782141
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| ||||||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  14782304 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggat 14782205  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  14782204 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 14782141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 19718050 - 19717887
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||| ||||||||||||||   ||||| ||||||    
T  19718050 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaagaattgtttaataaattggattttaatggat 19717951  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||||||||||||    
T  19717950 tttgtgggattttgtagtgtaattttaacaagaaaaagtcttttatgaaaagatgagatttctt 19717887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 43166863 - 43166696
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||  ||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||    
T  43166863 ttgtggtattcaatcaagactctttgtcattttaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgat 43166764  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||||||| | ||| ||||||| || |||||||| ||| ||||||| ||||||||||||    
T  43166763 ggattttgtgggattttgttgtgtaattttaacaagaaaaagtttttcatgaaaagatgagatttctt 43166696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 44725979 - 44725816
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| ||||||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  44725979 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggat 44725880  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  44725879 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 44725816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 43959695 - 43959854
Alignment:
Q  33 gtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggatt 132  Q
    |||||||||||||| ||||||||||||       | |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  43959695 gtattcaatcaagattcttaatcacttcaaaaaagactagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgatggatt 43959794  T
Q  133 ttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||          ||||||||||||||||||||||||||| || |||||||||||||||||| |||||    
T  43959795 ttgtg----------gtgaaattttagcatgaaaaagtctttaattaaaacatgagatttcttatgattg 43959854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 9288591 - 9288463
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||| ||||| ||||||| || ||||    
T  9288591 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatgaattttgtgggattttgtagtgtaattttaacaagaaa 9288492  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  9288491 aagtctttcatgaaaagatgagatttctt 9288463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 39467637 - 39467477
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  39467637 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattgaattttgatggat 39467538  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||| ||||||||| ||||| ||||||| || |||||| ||||| ||||||| |||||||||    
T  39467537 tttatgggattttgtagtgtaattttaacaagaaaaaatctttcatgaaaagatgagattt 39467477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 18958896 - 18958736
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||| ||||||    
T  18958896 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttaatggat 18958797  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| || ||||||    
T  18958796 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagattagattt 18958736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 26856099 - 26856267
Alignment:
Q  27 tttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttga 126  Q
    |||| ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||| ||||||||||||||   |||||||    
T  26856099 tttgaggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaagtattgtttaataaattggattttga 26856198  T
Q  127 tggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||||||||| ||||| ||||||| || |||||||||||| |  |||| || |||||||||    
T  26856199 tggattttgtgggattttgtagtgtaattttaacaagaaaaagtctttcagaaaaaaataagatttctt 26856267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 32711482 - 32711305
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||| ||||||||||    
T  32711482 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcatttaaatttcgaa 32711383  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagat 190  Q
    ||||||||||||||||||          |||||||||| |   |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  32711382 ggattgtttaataaatca----------gattttgtggaa--atctattgaaattttagcatgaaaaagtctttcatgaaaacaagagat 32711305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 4950139 - 4950021
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat 177  Q
    ||||||||||||||| |||| || |||| |||||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||||| | ||| ||    
T  4950139 ttcaaaatcattcaagtttcaaaagattatttaataaattagattttgatggaatttgtggaattttctagtgaaattttagcatgaaaaaatatttcat 4950040  T
Q  178 gaaaacatgagatttctta 196  Q
    | |||||| ||||||||||    
T  4950039 gcaaacataagatttctta 4950021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 39189937 - 39189815
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat 177  Q
    ||||| |||||||||||||||||||||||||||||||||  || ||||||||||||||  | |||||||||| |||||||| || |||||| ||||| ||    
T  39189937 ttcaacatcattcaaatttcgaaggattgtttaataaattgaa-tttgatggattttgatgaattttctagt-aaattttaacaagaaaaaatctttcat 39189840  T
Q  178 gaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||| ||||||    
T  39189839 gaaaacatgagatttcttgggattg 39189815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 13478373 - 13478269
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat 177  Q
    ||||||||| || |||||||||||||||||||||||||| | |||| | |||||||||| ||||||| |||  |||||||||||||| ||||||||||||    
T  13478373 ttcaaaatcttttaaatttcgaaggattgtttaataaattagatttcgttggattttgtaggattttttagctaaattttagcatgataaagtcttttat 13478274  T
Q  178 gaaaa 182  Q
    |||||    
T  13478273 gaaaa 13478269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 18306130 - 18305977
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| ||||||||||||||||||||||| |||||||||||||||          |||||    
T  18306130 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaagattgtttaataaat----------tggat 18306041  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  18306040 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 18305977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 32497562 - 32497715
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| ||||||||||||||||||||||| |||||||||||||||          |||||    
T  32497562 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaat----------tggat 32497651  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || || ||||||||| ||||||| ||||||||||||    
T  32497652 tttgtgggattttgtagtgtaattttaacaagagaaagtctttcatgaaaagatgagatttctt 32497715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 7466372 - 7466525
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || ||| |||       |||| ||||| ||||||||||||||||||| |||| ||||||||||||||          |||||    
T  7466372 ggtattcaatcaagacttttcatcgcttaaaaaaagtcttgtggtattcaaaatcattcaaattttgaagaattgtttaataaat----------tggat 7466461  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  7466462 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 7466525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 16362233 - 16362386
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || || ||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  16362233 ggtattcaatcaagacttttcattacttaaaaaaagtctcgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 16362332  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||          |||| ||||||| || |||||| |||||||| |||| ||||||||||||    
T  16362333 tttgt----------agtgtaattttaacaagaaaaaatcttttataaaaagatgagatttctt 16362386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 8410526 - 8410423
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtggga--ttttctagtgaaattttagcatgaaaaagt 170  Q
    |||| |||||||||||| |||||| ||||||||||||| |||||   | |||||||||||||||||||  |||| |||||||||||||| |||| |||||    
T  8410526 tggtattcaaaatcattgaaatttggaaggattgtttactaaattggactttgatggattttgtgggattttttttagtgaaattttagtatgacaaagt 8410427  T
Q  171 cttt 174  Q
    ||||    
T  8410426 cttt 8410423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 31623732 - 31623816
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  31623732 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaat 31623816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 4031392 - 4031343
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  4031392 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaat 4031343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 37857149 - 37857260
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    |||||| |||||||||| |||| | || |||||||       |||| ||||| |||||| ||||||||||||  ||||||||||||||||||   |||||    
T  37857149 gttttgaggtattcaattaagatttttcatcacttaaaaaaagtcttgtggtattcaaattcattcaaattttaaaggattgtttaataaattggatttt 37857248  T
Q  125 gatggattttgt 136  Q
    ||||||||||||    
T  37857249 gatggattttgt 37857260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 9770503 - 9770439
Alignment:
Q  138 ggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||| |||||||||| ||| ||||| | ||| || ||||||||||||||||||||||||    
T  9770503 ggattttctaatgaaattttaacataaaaaaatatttcatcaaaacatgagatttcttaggattg 9770439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 42305914 - 42305850
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgt 136  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||   ||||| |||||||||||    
T  42305914 gtggtattcaaaataattcaaatttcgaaggattgtttaatcaattggattttaatggattttgt 42305850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 60)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 43581290 - 43581090
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||| |||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  43581290 aagattctttgtcatttaaaaaaagtcttgttgtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 43581191  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43581190 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 43581091  T
Q  201 t 201  Q
    |    
T  43581090 t 43581090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 7718535 - 7718361
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7718535 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 7718436  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  7718435 ggattttgtgggattttctagtgaaattttagcatgaaaaaatctttcatgaaaacatgagatttcttaggattg 7718361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 34695304 - 34695481
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    |||||||||||||||||||||||||||||||||||       ||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  34695304 gttttgtggtattcaatcaagactcttaatcacttaaaaaaagtccagtggtattcaaaaccattcaaatttcgaaggattgtttaataaatcagatttt 34695403  T
Q  125 gatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34695404 gatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 34695481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 40996849 - 40996648
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||||||||||||||||||||||||||| |||       |||||||||| |||||||||||||||||||||||    
T  40996849 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcgcttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 40996750  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40996749 ggattgtttaataaatcagattttgatggattttgtaggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 40996650  T
Q  201 tg 202  Q
    ||    
T  40996649 tg 40996648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 7719433 - 7719259
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  7719433 ttgtggtattcaatcaagactcttaatcacttaaaaaaaatctagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgat 7719334  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7719333 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 7719259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 18914908 - 18914734
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  18914908 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcaaaggtttgtttaataaatcagattttgat 18914809  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18914808 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 18914734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 30440830 - 30441004
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30440830 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 30440929  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  30440930 ggattttgtgggattttctagtgaaattttagtatgaaaaagtctttcgtgaaaacatgagatttcttaggattg 30441004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 973191 - 973392
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||        | ||||||| |||||||||||||||||||||||    
T  973191 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaaatttagtggtattcaaaatcattcaaatttcgaa 973290  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  973291 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcaagaaaaagtctttcatgaaaacatgagatttcttaggat 973390  T
Q  201 tg 202  Q
    ||    
T  973391 tg 973392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 47914301 - 47914474
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||||||||||||||||||       |||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  47914301 tgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaatttcgaaggattgtttaataaataagattttgatg 47914400  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  47914401 gattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaagattg 47914474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 12893415 - 12893616
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||||||||| |||||||||||||||||||||       ||||| |||| |||||||||||||||||||||||    
T  12893415 aagattctttgtcatttaaaaaaagtcttgtggtatttaatcaagactcttaatcacttaaaaaaagtctaatggtattcaaaatcattcaaatttcgaa 12893514  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    | |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12893515 gaattgtttaataaatcagattttgatggattttgtgagattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 12893614  T
Q  201 tg 202  Q
    ||    
T  12893615 tg 12893616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 44343596 - 44343395
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||| ||||||||||||||||||||||||||       || ||||||| || ||||||||||||||||||||    
T  44343596 aagattctttgtcatttaaaaaaagtcttgtgatattcaatcaagactcttaatcacttaaaaaaagtttagtggtatttaaaatcattcaaatttcgaa 44343497  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  44343496 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcacgaaaacatgagatttcttaggat 44343397  T
Q  201 tg 202  Q
    ||    
T  44343396 tg 44343395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 47879203 - 47879376
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||||||||||||||||||       |||||||| | |||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  47879203 tgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaatttaaaaggattgtttaataaatcagattttgatg 47879302  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  47879303 gattttgtggaattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaagattg 47879376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 202
Target Start/End: Complemental strand, 20275433 - 20275262
Alignment:
Q  31 tggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatgga 130  Q
    |||||||||||||||||||||||||||||       ||||  |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20275433 tggtattcaatcaagactcttaatcacttaaaaaaagtcttatggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatgga 20275334  T
Q  131 ttttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||    
T  20275333 ttttgtgggattttttagtgaaattttagcatgaaaaagtctgtcatgaaagcatgagatttcttagcattg 20275262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 39219549 - 39219376
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||| ||||||||||||||||||||||||||       ||||| |||| ||||||||||||||||||| || | |||||||||||||||| ||||||||    
T  39219549 ttgtgttattcaatcaagactcttaatcacttaaaaaaagtctattggtattcaaaatcattcaaattttgatg-attgtttaataaatcagattttgat 39219451  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  39219450 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcataaaaacatgagatttcttaggattg 39219376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 34009046 - 34009221
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtc-tagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttga 126  Q
    ||||||||||||||||| ||||||||||||||       ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34009046 ttgtggtattcaatcaacactcttaatcacttaaaaaaagtcctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttga 34009145  T
Q  127 tggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||| |||||||| | |||||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  34009146 tggattttgtggaattttctaataaaattttagcataaaaaagtctttcaagaaaacatgagatttcttaggattg 34009221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 10068493 - 10068668
Alignment:
Q  27 tttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttga 126  Q
    |||| ||||||||||||||| | || |||||||       |||| ||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  10068493 tttgaggtattcaatcaagatttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattaaattttga 10068592  T
Q  127 tggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||||||||    
T  10068593 tggattttgtgggattttctagtgaaattttagcatgaaaaagtatttcataaaaacatgagatttgttaggattg 10068668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 32143046 - 32142916
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32143046 gtggtattcaaaatcattcaaattttgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 32142947  T
Q  172 ttttatgaaaacatgagatttcttaggattg 202  Q
    ||  || |||||||||||||||||| |||||    
T  32142946 ttccataaaaacatgagatttcttaagattg 32142916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 7113529 - 7113660
Alignment:
Q  71 agtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagt 170  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  7113529 agtggtattcaaaataattcaaatttcgcaggattgtttaataaatcagattttgatagattttgtgggattttctaggaaaattttagcatgaaaaagt 7113628  T
Q  171 cttttatgaaaacatgagatttcttaggattg 202  Q
    |||| |||||||||||| ||||||||||||||    
T  7113629 ctttcatgaaaacatgaaatttcttaggattg 7113660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 43679491 - 43679592
Alignment:
Q  71 agtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagt 170  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43679491 agtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagt 43679590  T
Q  171 ct 172  Q
    ||    
T  43679591 ct 43679592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 23101329 - 23101492
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  23101329 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 23101428  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  23101429 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 23101492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 28342413 - 28342541
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || ||||    
T  28342413 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaa 28342512  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  28342513 aagtctttcatgaaaagatgagatttctt 28342541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 33382668 - 33382828
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       ||||  |||| |||||||||||| ||||||||||||||||||||||||||   ||||||||||||    
T  33382668 ggtattcaatcaagacttttcatcacttaaaaaaagtctcatggtattcaaaatcatttaaatttcgaaggattgtttaataaattggattttgatggat 33382767  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||||||||||||| ||||| ||||||| || |||||||||||||||||||| |||||||||    
T  33382768 tttgtgggattttgtagtgtaattttaacaagaaaaagtcttttatgaaaagatgagattt 33382828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 3022957 - 3023120
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||| | || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  3022957 ggtattcaatcaagatttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 3023056  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||| ||| ||||||| ||||||||||||    
T  3023057 tttgtgggattttgtagtgtaattttaacaagaaaaagtttttcatgaaaagatgagatttctt 3023120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 8675364 - 8675527
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||| ||| ||||||||||||||||||||||   ||||||||||||    
T  8675364 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcatttaaacttcgaaggattgtttaataaattggattttgatggat 8675463  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||| ||||||||||||| ||||||||||||    
T  8675464 tttgtgggattttgtagtgtaattttaacaagaaaaaatcttttatgaaaagatgagatttctt 8675527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 29614933 - 29614770
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||| | |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  29614933 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtgatattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 29614834  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  29614833 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 29614770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 39784130 - 39784293
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||| ||||||||||||||||||||||||||   ||||||||||||    
T  39784130 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcatttaaatttcgaaggattgtttaataaattggattttgatggat 39784229  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  39784230 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 39784293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 9179880 - 9180071
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       ||||||| ||||||||||||||||||| |||||||       |||| ||||| | |||||||| | ||||| ||||    
T  9179880 aagattctttgtcatttaaaaaaagttttgtcgtattcaatcaagactcttcatcacttaaaaaaagtcttgtggtatacaaaatcacttaaattccgaa 9179979  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    ||||||||||||||||          |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  9179980 ggattgtttaataaat----------tggattttgtgggattttctagtgaatttttagcataaaaaagtctttcatgaaaacatgagatttcttaggat 9180069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 12963767 - 12963875
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| | ||||    
T  12963767 gtctcgtggtatccaaaatcattcaaatttcgaaggattgtttaataaattagattttgatggattttgtgggattttctagtgaaattttagtaagaaa 12963866  T
Q  167 aagtctttt 175  Q
    |||||||||    
T  12963867 aagtctttt 12963875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 7993214 - 7993336
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtct 172  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||| ||||| ||||||| || ||||||||||    
T  7993214 tggtattcaaaatcattcaaatttcgaaggattgtttaataaattgaattttgatggattgtgtgggattttgtagtgtaattttaacaagaaaaagtct 7993313  T
Q  173 tttatgaaaacatgagatttctt 195  Q
    || ||||||| || |||||||||    
T  7993314 ttcatgaaaagataagatttctt 7993336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 18838420 - 18838583
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || ||| |||       |||| ||||| ||||||||||||||||||||||| |||||||||||||||   ||||||||||||    
T  18838420 ggtattcaatcaagacttttcatcgcttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaagattgtttaataaattggattttgatggat 18838519  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||| ||| ||||||| ||||||||||||    
T  18838520 tttgtgggattttgtagtgtaattttaacaagaaaaagtatttcatgaaaagatgagatttctt 18838583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 28034972 - 28034811
Alignment:
Q  34 tattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattt 133  Q
    ||||||||||||||| || |||||||       |||| ||||| |||||||| ||||||||||| ||||||||||||||||||   ||||||||||||||    
T  28034972 tattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaattattcaaatttcaaaggattgtttaataaattggattttgatggattt 28034873  T
Q  134 tgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||| ||||| ||||||| ||  ||||||||||| ||||||| ||||||||||||    
T  28034872 tgtgggattttgtagtgtaattttaacaaaaaaaagtctttcatgaaaagatgagatttctt 28034811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 9882405 - 9882243
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| ||||||||||||||||||||||| |||||||||||||||   ||||||||||||    
T  9882405 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgatggat 9882306  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| |||||||  | |||||||||||| || |||| ||||||||||||    
T  9882305 tttgtgggattttgtagtgtaattttaagaagaaaaagtctttcat-aaaaaatgagatttctt 9882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 43187485 - 43187356
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtct 172  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||   ||||||||| ||||||| ||||||||||||||||||||| || ||||||||||    
T  43187485 tggtattcaaaatcattcaaattttgaagcattgtttaataaattggattttgatgaattttgtcggattttctagtgaaattttaacaagaaaaagtct 43187386  T
Q  173 tttatgaaaacatgagatttcttaggattg 202  Q
    || ||||| ||||||||||| || ||||||    
T  43187385 ttcatgaagacatgagattttttgggattg 43187356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 31638910 - 31639015
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||| ||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31638910 tgtggtattctatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatg 31639009  T
Q  129 gatttt 134  Q
    ||||||    
T  31639010 gatttt 31639015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 25805763 - 25805862
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||  |||| |||||||||||||||||||||||| | |||||||||||||||||||||    
T  25805763 gtggtattcaaaatcattcaaatttcgtaggattgtttaataaattgaattatgatggattttgtgggattttctaataaaattttagcatgaaaaagtc 25805862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 3797226 - 3797066
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| ||||| |||||| |||||| ||||||||||||||||||| | ||||||||||      
T  3797226 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaagatcattaaaattttgaaggattgtttaataaattagattttgatgg-- 3797129  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  3797128 -------gattttctagtgaaattttagcatgaaaaagtcttttaagaaaacat-agatttcttaggattg 3797066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 12740439 - 12740573
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||||||  | ||||||| |||||||||||||||| ||||| ||||||| || || |    
T  12740439 gtctcgtggtattcaaaatcattcaaatttcaaaggattgtttaataaatgga-ttttgatagattttgtgggattttatagtgtaattttaacaagaga 12740537  T
Q  167 aagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||| || |||| ||||||||||||| |||||    
T  12740538 aagtctttcataaaaagatgagatttcttaagattg 12740573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 727587 - 727692
Alignment:
Q  68 tctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaa 167  Q
    |||||| || |||||||||||||||||||| ||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  727587 tctagtagtattcaaaatcattcaaatttcaaaggattgtttaataaatca----------gattttgtgggattttctagtgaaattttagcatgaaaa 727676  T
Q  168 agtcttttatgaaaac 183  Q
    ||||||| ||||||||    
T  727677 agtctttcatgaaaac 727692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 37972981 - 37972873
Alignment:
Q  87 attcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatg 186  Q
    ||||||||||||||||||| ||||||||||   |||||||||||||||| |||||||| ||||| ||||||| || |||||||||||| ||||||| |||    
T  37972981 attcaaatttcgaaggattatttaataaattggattttgatggattttgcgggattttatagtgtaattttaacaagaaaaagtctttcatgaaaagatg 37972882  T
Q  187 agatttctt 195  Q
    ||| |||||    
T  37972881 agacttctt 37972873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 19810876 - 19810983
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat 177  Q
    |||||||||||||||||||| || |||||||||||||||          |||||||||||| ||||||||||||||||||||||| |||| |||||| ||    
T  19810876 ttcaaaatcattcaaatttcaaatgattgtttaataaat----------tggattttgtggaattttctagtgaaattttagcataaaaatgtctttcat 19810965  T
Q  178 gaaaacatgagatttctt 195  Q
    ||||||||||||||||||    
T  19810966 gaaaacatgagatttctt 19810983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 10676593 - 10676463
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||| || |||||||       ||||  | || |||||||||||||||||||||||||||||||||||||||   |||| |||    
T  10676593 ttgtggtattcaatcaagacttttcatcacttaaaaaaagtctcattgtattcaaaatcattcaaatttcgaaggattgtttaataaattggatttggat 10676494  T
Q  128 ggattttgtgggattttctagtgaaatttta 158  Q
    ||||||| ||| ||||||| |||||||||||    
T  10676493 ggattttatggaattttcttgtgaaatttta 10676463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 41827390 - 41827498
Alignment:
Q  87 attcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatg 186  Q
    ||||||| || |||||||||||||||||||   ||||||||||||||||||||||| | ||||| ||||||| || ||||| |||||| ||||||| |||    
T  41827390 attcaaaatttgaaggattgtttaataaattggattttgatggattttgtgggattgtgtagtgtaattttaacaagaaaatgtctttcatgaaaatatg 41827489  T
Q  187 agatttctt 195  Q
    |||||||||    
T  41827490 agatttctt 41827498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 19251605 - 19251729
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||          |||||||||  ||||||||| ||||||||||||||  |||    
T  19251605 gtctcgtggtattcaaaatcattcaaatttcgaaggattgtttaataaat----------tggattttgatggattttcttgtgaaattttagcaataaa 19251694  T
Q  167 aagtcttttatgaaaacatgagatttcttaggatt 201  Q
    |||||||| |||||||| ||| ||||||| |||||    
T  19251695 aagtctttcatgaaaacctgaaatttcttgggatt 19251729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 44256935 - 44256775
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       || | ||||| ||||||||||||||||||||||| |||||||||||||||   |||| |||| ||    
T  44256935 ggtattcaatcaagacttttcatcacttaaaaaaagtatcgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggatttggatgaat 44256836  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||||| |||||||  |||| ||||||| || |||||||| ||| || |||| |||||||||    
T  44256835 tttgttggattttgcagtgtaattttaacaagaaaaagtttttcatcaaaatatgagattt 44256775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 32883814 - 32883948
Alignment:
Q  33 gtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggatt 132  Q
    ||||||||| |||||| || |||||||       |||| ||||| ||||||||||||||||||||||| ||||||||| |||||   |||||||||||||    
T  32883814 gtattcaattaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaatgattgtttattaaattggattttgatggatt 32883913  T
Q  133 ttgtgggattttctagtgaaattttagcatgaaaa 167  Q
    | |||||||||| ||||| ||||||| || |||||    
T  32883914 tcgtgggattttgtagtgtaattttaacaagaaaa 32883948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 44122069 - 44121919
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||        ||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  44122069 ggtattcaatcaagacttttcatcacttaaaaaaaatcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 44121970  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||||          ||||| ||||||| || |||||||||||| ||||||| |||||||||    
T  44121969 tttg----------tagtgtaattttaacaagaaaaagtctttaatgaaaagatgagattt 44121919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 37327958 - 37328062
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || || ||||       |||| ||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  37327958 ggtattcaatcaagacttttcattacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcaaaggattgtttaataaattgaattttgatggat 37328057  T
Q  132 tttgt 136  Q
    |||||    
T  37328058 tttgt 37328062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 40460874 - 40460772
Alignment:
Q  34 tattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattt 133  Q
    ||||||||||||||| || |||||||       |||| ||||| ||||||||||||||||||||||| |||||||||||||||   ||||||||||||||    
T  40460874 tattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgatggattt 40460775  T
Q  134 tgt 136  Q
    |||    
T  40460774 tgt 40460772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 46405600 - 46405494
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||| || |||||||||||||||   ||||||||||||    
T  46405600 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcaaatgattgtttaataaattggattttgatggat 46405501  T
Q  132 tttgtgg 138  Q
    |||||||    
T  46405500 tttgtgg 46405494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 509687 - 509840
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| ||||||||||||||||||||||| |||||||||||||||   ||||||||||||    
T  509687 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaacgattgtttaataaattggattttgatggat 509786  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||          ||||  |||||| || |||||||||||| ||||||| ||||||||||||    
T  509787 tttgt----------agtgggattttaacaagaaaaagtctttcatgaaaagatgagatttctt 509840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 1470362 - 1470252
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| ||||||||| |||||||||  ||| |||||||||| ||| | |||||||| | ||||||||||||||||  | |||||||||||||||||| ||    
T  1470362 gtggtattcaaaatcgttcaaattttaaagcattgtttaatgaattagattttgatag-ttttgtgggattttctgataaaattttagcatgaaaaaatc 1470264  T
Q  172 ttttatgaaaac 183  Q
    |||| |||||||    
T  1470263 ttttttgaaaac 1470252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 47066770 - 47066819
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  47066770 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaat 47066819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 17001152 - 17001108
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  17001152 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaat 17001108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 44623449 - 44623315
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||||||||| ||||||||||||| |||||||       |||| ||| | |||||||||||||| ||||| || || ||||||||||||          |    
T  44623449 ttgtggtatttaatcaagactcttcatcactttaaaaaggtctcgtgatattcaaaatcattcatatttctaaagactgtttaataaat----------t 44623360  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtct 172  Q
    | ||||||||| |||||||||||||||||||| ||||||||||||    
T  44623359 gaattttgtggaattttctagtgaaattttagaatgaaaaagtct 44623315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 29585586 - 29585649
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgt 136  Q
    |||| ||||||||||||||||||| ||||||||||||||||| |   |||||||||||||||||    
T  29585586 tggtattcaaaatcattcaaattttgaaggattgtttaataatttggattttgatggattttgt 29585649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 33892419 - 33892335
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    ||||||||||||||||| || |||||||       |||| ||||| ||||||||||||||||||||||| ||||||| |||||||    
T  33892419 ggtattcaatcaagacttttcatcacttaaacaaagtcttgtggtattcaaaatcattcaaatttcgaatgattgttaaataaat 33892335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 10617024 - 10617102
Alignment:
Q  107 tttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacat 185  Q
    |||||||||| | |||||||||||||||||| ||||||||||||| ||||||| |  || |||||||| || |||||||    
T  10617024 tttaataaattagattttgatggattttgtgagattttctagtgatattttagtaataacaagtctttcataaaaacat 10617102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 39028130 - 39028232
Alignment:
Q  34 tattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattt 133  Q
    ||||||||||||||| || |||||||       |||| ||| | ||||||||| |||||||| |||| |||||||||||||||   ||||||||||||||    
T  39028130 tattcaatcaagacttttcatcacttaaaaaaagtcttgtgttattcaaaatcgttcaaattacgaaagattgtttaataaattggattttgatggattt 39028229  T
Q  134 tgt 136  Q
    |||    
T  39028230 tgt 39028232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #59
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 447854 - 447913
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||| || |||||||||||||||||||| ||||||||||| |||   ||||||||||||    
T  447854 gtggtatttaaaatcattcaaatttcgaatgattgtttaattaattggattttgatggat 447913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #60
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 17001106 - 17001049
Alignment:
Q  138 ggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||| ||||| |||| || || |||||||||||| ||||||| ||||||||||||    
T  17001106 ggattttgtagtgtaattataacaagaaaaagtctttcatgaaaatatgagatttctt 17001049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15234 - 15033
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||| |||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  15234 aagattctttgtcatttaaaaaaagtcttgtagtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 15135  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  15134 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgaaatttcttaggat 15035  T
Q  201 tg 202  Q
    ||    
T  15034 tg 15033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15877 - 15676
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||| |||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  15877 aagattctttgtcatttaaaaaaagtcttgtagtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 15778  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  15777 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgaaatttcttaggat 15678  T
Q  201 tg 202  Q
    ||    
T  15677 tg 15676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 64)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25331136 - 25331337
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||| | |||||||||||||||||||| ||    
T  25331136 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaatttcaaa 25331235  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25331236 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 25331335  T
Q  201 tg 202  Q
    ||    
T  25331336 tg 25331337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 41881284 - 41881082
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||        || ||||||| ||||||||||||||||||||||    
T  41881284 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaaagtttagtggtattcaaaatcattcaaatttcga 41881185  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagga 199  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41881184 aggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttagga 41881085  T
Q  200 ttg 202  Q
    |||    
T  41881084 ttg 41881082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 55302876 - 55303049
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55302876 tgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatg 55302975  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  55302976 gatattgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaagattg 55303049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 32951009 - 32950837
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32951009 tgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatg 32950910  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggatt 201  Q
     ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  32950909 aattttgtgggattttctagtgaaattttagcatgaaaaattctttcatgaaaacatgagatttcttaagatt 32950837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 1044839 - 1045013
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  1044839 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaaccattcaactttcgaaggattgtttaataaatcagattttgat 1044938  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  1044939 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacataagatttcttagaattg 1045013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22202020 - 22202243
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||| ||||||| ||    
T  22202020 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattaaaatttcaaa 22202119  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||    
T  22202120 agattgtttaataaataaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacattagatttcttagcat 22202219  T
Q  201 tgnnnnnnncttttaaaattttac 224  Q
    ||       |||||||||||||||    
T  22202220 tgtttttttcttttaaaattttac 22202243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1112898 - 1113099
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||| ||    
T  1112898 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcaaa 1112997  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
     ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  1112998 tgattgtttaataaatcagattttgatggattttgtgggatttcctagtaaaattttaacatgaaaaagtctttcatgaaaacatgagatttcttaggat 1113097  T
Q  201 tg 202  Q
    ||    
T  1113098 tg 1113099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 12112950 - 12113151
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||| ||||||||||||||       ||||| |||| |||||||||||||||||||||||    
T  12112950 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaaaactcttaatcacttaaaaaaagtctaatggtattcaaaatcattcaaatttcgaa 12113049  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  12113050 ggattgtttaataaatcagattttaatggattttgtggaattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttgggat 12113149  T
Q  201 tg 202  Q
    ||    
T  12113150 tg 12113151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 42786716 - 42786890
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||| ||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42786716 ttgtggtattcaatcaagactcttaatcatttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcatattttgat 42786815  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||||    
T  42786816 ggattttgtggaattttctagtgaaattttatcataaaaaagtctttcatgaaaacatgagatttcttatgattg 42786890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 7007407 - 7007580
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7007407 tgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatg 7007506  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
     ||||||||||||||||||||||||||||||||||||||  | ||| ||||||||||||||||||||| |||||    
T  7007507 aattttgtgggattttctagtgaaattttagcatgaaaatttttttcatgaaaacatgagatttcttaagattg 7007580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 37046653 - 37046450
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||        |||||||| | || |||||||||||||||||||    
T  37046653 aagattctttgtcatttaaaaaaagttttgtggtattcaatcaagactcttaatcacttaaaaaaaagtctagtgatatttaaaatcattcaaatttcga 37046554  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtg-aaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagg 198  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  37046553 aggattgtttaataaatcagattttgatggattttgtggaattttctagtgaaaattttagcatgaaaaagtctttcatgaaaatatgagatttcttagg 37046454  T
Q  199 attg 202  Q
    ||||    
T  37046453 attg 37046450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 30009850 - 30009677
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||||||||||||||||||       |||||||||| |||||||||||| ||||||  || ||||||||||||||||| |||||||||    
T  30009850 tgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcatttaaattttaaatgattgtttaataaatcagattttgatg 30009751  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  30009750 gattttgtgggattttctagtaaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaagattg 30009677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 34228756 - 34228583
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||| | ||||||||||||       |||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  34228756 tgtggtattcaatcaaaattcttaatcacttaaaaaaagtctagtggtattcaaaatcattgaaatttcgaatgattgtttaataaatcagattttgatg 34228657  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  34228656 gattttgtaggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaagattg 34228583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 39479531 - 39479355
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnn--gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttg 125  Q
    ||||||||||||||||||||||||||||||||         | || ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  39479531 ttgtggtattcaatcaagactcttaatcacttaaaaaaaaagacttgtggtattcaaaatcattcaaatttcgaagaattgtttaataaatcagattttg 39479432  T
Q  126 atggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  39479431 atggattttgtgggattttctagtgaaattttagcaggaaaaagtctttcatgaaagcatgagatttcttaggattg 39479355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 41320853 - 41321016
Alignment:
Q  39 aatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgg 138  Q
    |||||||||||||||||| ||       |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41320853 aatcaagactcttaatcatttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgg 41320952  T
Q  139 gattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||| |||||    
T  41320953 gatgttctagtgaaattttagtatgaaaaagtctttcataaaaacatgagatttcttaagattg 41321016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 25446082 - 25446227
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  25446082 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgat 25446181  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctt 173  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25446182 ggattttgtgggattttttagtgaaattttagcatgaaaaagtctt 25446227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 28541732 - 28541874
Alignment:
Q  30 gtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatgg 129  Q
    ||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  28541732 gtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgatgg 28541831  T
Q  130 attttgtgggattttctagtgaaattttagcatgaaaaagtct 172  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  28541832 attttgtggaattttctagtgaaattttagcatgaaaaagtct 28541874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 3436625 - 3436799
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||| ||||||||||||||||||||||| ||        |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3436625 ttgtgatattcaatcaagactcttaatcatttaaaaaaaatctaatggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 3436724  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    | ||||||||||||||| ||||||||||||| ||||||||||| ||| |||||||||| ||||||||||| ||||    
T  3436725 gaattttgtgggattttgtagtgaaattttaacatgaaaaagtttttcatgaaaacataagatttcttagaattg 3436799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 46635843 - 46635626
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       || |||| || |||||||||||||||||||||||    
T  46635843 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtttagtagtattcaaaatcattcaaatttcgaa 46635744  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||| | |||      |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  46635743 ggattgtttaataaataagatt------gattttgtgggattttttagtgaaattttagcatgaaaaagtctttcataaaaacatgagatttcttaggat 46635650  T
Q  201 tgnnnnnnncttttaaaattttac 224  Q
    ||       |||||||||||||||    
T  46635649 tgtttttttcttttaaaattttac 46635626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 7249900 - 7249795
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7249900 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaa 7249801  T
Q  167 aagtct 172  Q
    ||||||    
T  7249800 aagtct 7249795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 31314893 - 31314742
Alignment:
Q  41 tcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtggga 140  Q
    |||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||          ||||||||||||    
T  31314893 tcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatca----------gattttgtggga 31314804  T
Q  141 ttttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31314803 ttttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 31314742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 19741081 - 19740929
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    ||||||||||| |||||||| ||||||||||       |||| ||||| || |||||||||||||||||||||||||||||||||||| | |||||||||    
T  19741081 tgtggtattcagtcaagacttttaatcacttaaaaaaagtcttgtggtattaaaaatcattcaaatttcgaaggattgtttaataaattagattttgatg 19740982  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaa 181  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  19740981 gattttgtgggattttctagtgaaattttagcttgaaaaagtctttcatgaaa 19740929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 24131173 - 24130981
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       ||||||||||          ||||||||||||||    
T  24131173 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggt----------attcaaatttcgaa 24131084  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatg-aaaaagtcttttatgaaaacatgagatttcttagga 199  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  24131083 tgattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttaggatgaaaaaaatctttcatgaaaacatgagatttcttagga 24130984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 5441440 - 5441603
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  5441440 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 5441539  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  5441540 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 5441603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 27768092 - 27768255
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  27768092 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 27768191  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  27768192 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 27768255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 54341180 - 54341343
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  54341180 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 54341279  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  54341280 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 54341343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 23464984 - 23465117
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    |||||||  ||||||||||||||||||||||||||       |||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |||    
T  23464984 gttttgtaatattcaatcaagactcttaatcacttaaaataagtctagtggtattcaaaaccattcaaatttcgaaggattgtttaataaatcagaattt 23465083  T
Q  125 gatggattttgtgggattttctagtgaaatttta 158  Q
    ||||||||||||||||||||||||| ||||||||    
T  23465084 gatggattttgtgggattttctagttaaatttta 23465117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 53275871 - 53276046
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||| |||||||||||||| | ||||||||||       |||||||| | || ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  53275871 ttgtagtattcaatcaagatttttaatcacttaaaaaaagtctagtgatatttaaaatcattcaaatttcgaaggattgtgtaataaatcagattttgat 53275970  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttta-tgaaaacatgagatttcttaggattg 202  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||| | | ||||| | |||||| |||||||||    
T  53275971 ggattttgtgagattttctaataaaattttagcatgaaaaagtctttcattaaaaactttagattttttaggattg 53276046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 9163108 - 9163245
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||| | || ||||| |       |||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9163108 ttgtggtattcaatcaagatttttcatcacataaaaaaagtcttgtgatattcaaaatcattcaaatttcgaaggattgtttaataaattaaattttgat 9163207  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaa 165  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  9163208 ggattttgtggaattttctagtgaaattttagcatgaa 9163245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 27454210 - 27454078
Alignment:
Q  70 tagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaag 169  Q
    ||||||| ||||||||||||||||||| ||| |||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||    
T  27454210 tagtggtattcaaaatcattcaaattttgaaagattatttaataaatcagattttgatgaattttgtggaattttctagtgaaattttggcatgaaaaag 27454111  T
Q  170 tcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||| |||||||||| | |||| ||| |||||    
T  27454110 tctttcatgaaaacataatatttgttaagattg 27454078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 37828537 - 37828409
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||| |||||||  | ||||    
T  37828537 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaaaaagaaa 37828438  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  37828437 aagtctttcatgaaaagatgagatttctt 37828409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 32322127 - 32322290
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||| | || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  32322127 ggtattcaatcaagatttttcatcacttaaaaatagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattgaattttgatggat 32322226  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| |||||||  | ||||| |||||| || |||| ||||||||||||    
T  32322227 tttgtgggattttgtagtgtaattttaataagaaaatgtctttcataaaaagatgagatttctt 32322290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 51320957 - 51321120
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  51320957 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 51321056  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||  ||||| ||||| ||||||| || |||||||| ||| ||||||| ||||||||||||    
T  51321057 tttgtgtaattttatagtgtaattttaacaagaaaaagtttttcatgaaaagatgagatttctt 51321120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 54853637 - 54853475
Alignment:
Q  33 gtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggatt 132  Q
    |||||||||||||||| || |||||||       |||| ||||| |||||||| ||||||||||| ||||||||||||||||||   |||||||||||||    
T  54853637 gtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaattattcaaatttcaaaggattgtttaataaattggattttgatggatt 54853538  T
Q  133 ttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||| ||||| ||||||| || |||||| ||||| ||||||| ||||||||||||    
T  54853537 ttgtgggattttgtagtgtaattttaacaagaaaaaatctttcatgaaaagatgagatttctt 54853475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 25504813 - 25504696
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||| ||||||||||||||||||||||||||       ||| |||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25504813 ttgtgatattcaatcaagactcttaatcacttaaaaaaagtccagtgatattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 25504714  T
Q  128 ggattttgtgggattttc 145  Q
    ||||||||||||||||||    
T  25504713 ggattttgtgggattttc 25504696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 48261198 - 48261326
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || ||||    
T  48261198 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaa 48261297  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    || ||||| ||||||| ||||||||||||    
T  48261298 aaatctttcatgaaaatatgagatttctt 48261326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 37915863 - 37916023
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  37915863 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 37915962  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||||||||||||| ||||| | ||||| || ||||||||| || ||||||| || ||||||    
T  37915963 tttgtgggattttgtagtgtacttttaacaagaaaaagtcattcatgaaaagataagattt 37916023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 39307427 - 39307253
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||| |||| |||| ||       |||| ||||| |||| ||||||||||||||| || |||| |||||| |||  | |||||||    
T  39307427 ttgtggtattcaatcaagattcttcatcatttaaaaaaagtcttgtggtattcataatcattcaaatttctaaagattatttaatgaattgagttttgat 39307328  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    | ||||||||||||||||||||||||||||| ||||||||||| | | || ||||||||||||||||||| ||||    
T  39307327 gaattttgtgggattttctagtgaaattttaacatgaaaaagtttctgataaaaacatgagatttcttagaattg 39307253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 44770982 - 44770862
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtct 172  Q
    |||| ||||||||||||||||||| |||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||  | ||||||||||    
T  44770982 tggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttggtggattttgtgggattttctagtgaaattttaagaagaaaaagtct 44770883  T
Q  173 tttatgaaaacatgagatttc 193  Q
    || ||||  ||||||||||||    
T  44770882 ttcatgacgacatgagatttc 44770862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 40537280 - 40537161
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||  |||||||||||||||||||          |||||||||||||||||||||||    
T  40537280 gtggtattcaaaatcatttaaatttcgaatgattgtttaataaatctgattttgatggattttgtgg----------tgaaattttagcatgaaaaagtc 40537191  T
Q  172 ttttatgaaaacatgagatttcttaggatt 201  Q
    ||| ||||||||||||||||||||||||||    
T  40537190 tttcatgaaaacatgagatttcttaggatt 40537161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 8711990 - 8712065
Alignment:
Q  120 attttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||    
T  8711990 attttgatggattttgtgggattttatagtgaaattttagcaagaaaaagtctttcatcaaaacatgagatttctt 8712065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 11090435 - 11090510
Alignment:
Q  127 tggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  11090435 tggattttgtgggattttttagtgaaattttagcattaaaaagtctttaataaaaacatgagatttcttaggattg 11090510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 12913301 - 12913413
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtct 172  Q
    |||| ||||||||||||||||||| |||||||||||||||||||          |||||||||||||||||||||||||||||||| || |||||||| |    
T  12913301 tggtattcaaaatcattcaaattttgaaggattgtttaataaat----------tggattttgtgggattttctagtgaaattttaacaagaaaaagtat 12913390  T
Q  173 tttatgaaaacatgagatttctt 195  Q
    || ||||| ||||||||||||||    
T  12913391 ttcatgaagacatgagatttctt 12913413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 23987250 - 23987403
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||| ||| || |||||||       |||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  23987250 ggtattcaatcaaaacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattagattttgatggat 23987349  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||          ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  23987350 tttg----------tagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 23987403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 56445474 - 56445362
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtct 172  Q
    |||| ||||||||||||||||||||||| |||||||||||||||          ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  56445474 tggtattcaaaatcattcaaatttcgaatgattgtttaataaat----------tggattttgtgggattttctagtgaaactttagcaagaaaaagtct 56445385  T
Q  173 tttatgaaaacatgagatttctt 195  Q
    || || || ||||||||||||||    
T  56445384 ttcataaagacatgagatttctt 56445362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 28371001 - 28371086
Alignment:
Q  73 tggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaatttta 158  Q
    |||| |||||||||||||||||||  ||||||||||||||||||  ||||||| || |||||||||||||||||||||||||||||    
T  28371001 tggtattcaaaatcattcaaattttaaaggattgtttaataaattgaattttggtgaattttgtgggattttctagtgaaatttta 28371086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 24736459 - 24736534
Alignment:
Q  120 attttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||||||||| |||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||    
T  24736459 attttgatggattttgtgagattttctagtgaaattttaacaagaagaagtctttcatgaaaacatgagatttctt 24736534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 41725207 - 41725321
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat 177  Q
    ||||||||||||||||||| ||||||||||||||   ||   ||||||||| ||||||||||||||| ||||| ||||||| || |||||| ||||| ||    
T  41725207 ttcaaaatcattcaaattttgaaggattgtttaa---attggattttgatgaattttgtgggattttatagtgtaattttaacaagaaaaaatctttcat 41725303  T
Q  178 gaaaacatgagatttctt 195  Q
    ||||| ||||||||||||    
T  41725304 gaaaagatgagatttctt 41725321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 30967476 - 30967316
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    |||||| ||||||||||||||| | || |||||||       |||| ||||| |||||||||||||||||||| ||||||||||||||||||            
T  30967476 gttttgaggtattcaatcaagatttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcaaaggattgtttaataaat-------- 30967385  T
Q  125 gatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
      |||||||||||||||||| ||||| ||||||| || |||||| ||||| ||||||| || |||||||||    
T  30967384 --tggattttgtgggattttgtagtgtaattttaacaagaaaaaatctttcatgaaaaaataagatttctt 30967316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 36479366 - 36479249
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||| ||||||||||||||||||| ||||||||||   |||||||||||||||           ||||||||||||||||  |||    
T  36479366 gtctcgtggtattcaaaattattcaaatttcgaaggattatttaataaattggattttgatggatttt-----------tagtgaaattttagcaaaaaa 36479278  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||||||||||||||||||||    
T  36479277 aagtcttttatgaaaacatgagatttctt 36479249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 29649837 - 29649731
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| ||||||||||||||||||||||| |||||||||||||||   ||||||||||||    
T  29649837 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaagattgtttaataaattggattttgatggat 29649738  T
Q  132 tttgtgg 138  Q
    |||||||    
T  29649737 tttgtgg 29649731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 28483935 - 28484093
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||| ||||||||||          |||||    
T  28483935 ggtattcaatcaagacttttcatcacttaaaaaaagtctcgtggtattcaaaatcattcaaatttcgaaggattatttaataaat----------tggat 28484024  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggatt 201  Q
    ||||| ||||||| ||||| || |||| || |||||||||||| ||||||| | ||||||||||| ||||    
T  28484025 tttgtaggattttgtagtgtaa-tttaacaagaaaaagtctttcatgaaaagacgagatttcttaagatt 28484093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 49834983 - 49834899
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  49834983 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaat 49834899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 49501681 - 49501526
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||  ||||||||||||||||||||||| |||||||||||||||          |||||    
T  49501681 ggtattcaatcaagacttttcatcacttaaaaaatgtcttgtggcattcaaaatcattcaaatttcgaatgattgtttaataaat----------tggat 49501592  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttt--tatgaaaacatgagatttctt 195  Q
    ||||||| ||||| ||||| ||||||| || ||||||||||||  ||| |||| ||||||||||||    
T  49501591 tttgtggaattttgtagtgtaattttaacaagaaaaagtctttcatataaaaagatgagatttctt 49501526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 49507746 - 49507591
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||  ||||||||||||||||||||||| |||||||||||||||          |||||    
T  49507746 ggtattcaatcaagacttttcatcacttaaaaaatgtcttgtggcattcaaaatcattcaaatttcgaatgattgtttaataaat----------tggat 49507657  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttt--tatgaaaacatgagatttctt 195  Q
    ||||||| ||||| ||||| ||||||| || ||||||||||||  ||| |||| ||||||||||||    
T  49507656 tttgtggaattttgtagtgtaattttaacaagaaaaagtctttcatataaaaagatgagatttctt 49507591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 5800049 - 5800164
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||||||          ||||||||||| |||||| ||| | ||||||| || ||||    
T  5800049 gtcttgtggtattcaaaatcattcaaatttcaaaggattgtttaataaat----------tggattttgtgagattttgtagagtaattttaacaagaaa 5800138  T
Q  167 aagtcttttatgaaaacatgagattt 192  Q
    |||||||| ||||||| || ||||||    
T  5800139 aagtctttaatgaaaagataagattt 5800164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 32684123 - 32684074
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  32684123 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaat 32684074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 41581905 - 41581795
Alignment:
Q  85 tcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatg-aaaaagtcttttatgaaaac 183  Q
    |||||||||||| |||  ||||||||||||||   |||  |||  ||||||||||||||||||||||||||||| |||| ||||| | ||| ||| ||||    
T  41581905 tcattcaaattttgaataattgtttaataaattggatt--gatatattttgtgggattttctagtgaaattttaacatgaaaaaaatatttcatgtaaac 41581808  T
Q  184 atgagatttctta 196  Q
    |||||||||||||    
T  41581807 atgagatttctta 41581795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 50018322 - 50018391
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgt 136  Q
    |||| ||||| ||||| ||||||||||||| |||||||||||||||||||  |||||| |||||||||||    
T  50018322 gtcttgtggtattcaagatcattcaaattttgaaggattgtttaataaattgaattttaatggattttgt 50018391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 20021424 - 20021495
Alignment:
Q  87 attcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaatttta 158  Q
    ||||||||||  |||||||||||||||||| | |||||| |||||||| ||||||||| || ||||||||||    
T  20021424 attcaaattttaaaggattgtttaataaattagattttgctggattttatgggattttttaatgaaatttta 20021495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 32684072 - 32684018
Alignment:
Q  138 ggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||||||| ||||| ||||||| || |||||||||||| ||||||| |||||||||    
T  32684072 ggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagattt 32684018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 13400887 - 13400814
Alignment:
Q  121 ttttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttct 194  Q
    |||||||| |||||||| |||||| || ||||| |||  ||| ||||| |||| ||| ||||||||||||||||    
T  13400887 ttttgatgaattttgtgagattttttaatgaaaatttttcataaaaaaatcttctattaaaacatgagatttct 13400814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 12193135 - 12193227
Alignment:
Q  102 gattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttct 194  Q
    ||||||||||||| |  ||||||| |||||||||||||| | | ||||||| ||| ||||| ||||| ||||  || ||||||  ||||||||    
T  12193135 gattgtttaataagttgaattttggtggattttgtgggaatatttagtgaattttcagcataaaaaaatcttacattaaaacacaagatttct 12193227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 36728023 - 36727960
Alignment:
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||||||||| ||||||| ||||||||||||| || |||||| ||||| ||| | |||||||||||    
T  36728023 ggattttgtaggattttttagtgaaattttaacaagaaaaaatctttcatg-agacatgagattt 36727960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 38778 - 38605
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  38778 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataa-tcagattttgat 38680  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38679 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggattg 38605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 45760182 - 45760009
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  45760182 tgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaacttcgaaggattgtttaataaatcagattttgatg 45760083  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  45760082 gattttgtgggattttctagtgaaattttagcatgaaaaagtatttgatgaaaacatgagatttcttaggattg 45760009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 19452009 - 19451808
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||||||||| |||||||||||||||||||||       |||||||||| |||||||||||||||||||||||    
T  19452009 aagattctttgtcatttaaaaaaagtcttgtggtatttaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaa 19451910  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  19451909 ggatcgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttatgat 19451810  T
Q  201 tg 202  Q
    ||    
T  19451809 tg 19451808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 21222146 - 21222347
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||       |||||| ||| |||||||||||||||||||||||    
T  21222146 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagaggtattcaaaatcattcaaatttcgaa 21222245  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21222246 ggattgtttaataaataagattttgatggattttgtgggattttttagtgaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttaggat 21222345  T
Q  201 tg 202  Q
    ||    
T  21222346 tg 21222347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 49198469 - 49198269
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       ||||||||||||||||| |||||||||||||||||       ||  |||||| |||||||||||||||||||||||    
T  49198469 aagattctttgtcatttaaaaaaagttttgtggtattcaat-aagactcttaatcacttaaaaaaagttcagtggtattcaaaatcattcaaatttcgaa 49198371  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  49198370 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgatatttcttaggat 49198271  T
Q  201 tg 202  Q
    ||    
T  49198270 tg 49198269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 50192725 - 50192550
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttga 126  Q
    ||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  50192725 ttgtggtattcaatcaagactcttaatcacttaaaaaaaagtctagtggtattcaaaatcattcaaattttgaaggattgtttaataaatcagattttga 50192626  T
Q  127 tggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  50192625 tggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgagattttttaggattg 50192550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 35279671 - 35279872
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||||||| ||||||||||       |||||||||| |||||||||||| ||||||||||    
T  35279671 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactattaatcacttaaaaaaagtctagtggtattcaaaatcatttaaatttcgaa 35279770  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||    
T  35279771 ggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatttcaacatgaaaaagtctttcatgaaaacatgagatttcttagaat 35279870  T
Q  201 tg 202  Q
    ||    
T  35279871 tg 35279872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 28824546 - 28824373
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||| ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  28824546 ttgtggtattcaatcaagactcttaatcacttaaaaacagtcttgtggtattcaaaatcattcaaatttcgaag-attgtttaataaatcagattttgat 28824448  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  28824447 ggattttgtgggattttctagggaaattttaacatgaaaaagtcttttataaaaacatgagatttcttaggattg 28824373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6304454 - 6304252
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaaga-ctcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       || ||||||||||||| ||| | |||||||||||||       |||||||||| ||||||||||||||||||||||    
T  6304454 aagattctttgtcatttaaaaaaagtcttgtggtattcaaccaaaaactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcga 6304355  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagga 199  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||    
T  6304354 aggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacatgaaatttcttatga 6304255  T
Q  200 ttg 202  Q
    |||    
T  6304254 ttg 6304252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 45535970 - 45536150
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||||||||||||||||||||||||||| |||       |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  45535970 ttgtggtattcaatcaagactcttaatcgcttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaagattgtttaataaatcagattttgat 45536069  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat------gaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||      |||||||||||||||||||||||||    
T  45536070 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcatgaaaacgaaaacatgagatttcttaggattg 45536150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 47654553 - 47654351
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       || ||||||||||||||||| ||||||||||||||        |||||||||| |||||||| |||||||||||||    
T  47654553 aagattctttgtcatttaaaagaagtcttgtggtattcaatcaaaactcttaatcacttaaaaaaaagtctagtggtattcaaaattattcaaatttcga 47654454  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagga 199  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  47654453 aggattgtttaataaatcagattttgatggattttgtggaattttctagggaaattttagcatgaaaaagtatttcatgaaaacatgagatttcttagga 47654354  T
Q  200 ttg 202  Q
    |||    
T  47654353 ttg 47654351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 49418111 - 49418279
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    ||||||||||||| |||||||||||||||||       |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  49418111 tgtggtattcaattaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcaaaggattgtttaataaatcagattttgatg 49418210  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttag 197  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  49418211 gattttgtgggattttctattgaaattttagcatgaaaaaatctttcatgaaaatatgagatttcttag 49418279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 35679302 - 35679128
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||| |||||||||||||||||||||||||||       |||  ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35679302 ttgtagtattcaatcaagactcttaatcacttaaaaaaagtcatgtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgat 35679203  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  35679202 ggatttgatgggattttctagtgaaattttagcatgaaaaagtctttcatgaagacatgagatttcttaagattg 35679128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 47780738 - 47780911
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    |||||||||||||||||||||||||||||||       |||||||| | |||||||||||||||| ||  |||||||||||||||||||| |||||||||    
T  47780738 tgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaaattaaaaggattgtttaataaatcagattttgatg 47780837  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||||    
T  47780838 gattttgtgggattttctagtgaaattttaacatgaaaaagtttttcatgaaaacatgagatttcttaagattg 47780911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 29556130 - 29556305
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||| ||||||||||||||||||||||||||        ||||||| | ||||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  29556130 ttgtgttattcaatcaagactcttaatcacttaaaaaaaatctagtgttattcaaaatcattcaaatttcgaaagattgtttaataaattagattttgat 29556229  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaa-acatgagatttcttaggattg 202  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  29556230 ggattttatgggattttctaatgaaattttagcttgaaaaagtcttttatgaaacacatgagatttcttaggattg 29556305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 32589127 - 32588963
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||||| ||||||||||||||||| |||||||       |||| ||||| ||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  32589127 ttgtggcattcaatcaagactcttcatcacttaaaagaagtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaatcggattttgat 32589028  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  32589027 ggattttgtgagattttctagtgaaattttagcataaaaaagtctttcatgaaaacatgagattt 32588963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 31572327 - 31572197
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  31572327 gtggtattcaaaatcatttaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttatagtgaaattttaggatgaaaaagtc 31572228  T
Q  172 ttttatgaaaacatgagatttcttaggattg 202  Q
    ||| |||||| ||||||||||||||| ||||    
T  31572227 tttcatgaaatcatgagatttcttagaattg 31572197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 730147 - 730314
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnn-gtctagtggtgttcaaaatcattcaaatttcga 99  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||    
T  730147 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatcacttaaaaaaaagtctagtggtattcaaaatcattcaaatttcga 730246  T
Q  100 aggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaa 167  Q
     | |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  730247 cgaattgtttaataaatcagattttgatggattttgtgagattttctagtgaaattttagcatgaaaa 730314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 37014814 - 37014640
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||| | |||| |||||||       |||| ||| | |||||||||||||||||||| || |||||||| ||||||  |||||||||    
T  37014814 ttgtggtattcaatcaatattcttcatcacttaaaaaaagtcttgtgatattcaaaatcattcaaatttctaaagattgttttataaattgaattttgat 37014715  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |||||    
T  37014714 ggattttgtcggattttctagtgaaattttagcatgaaaaagtctctcataaaaacatgagatttcttaagattg 37014640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 9577556 - 9577432
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttat 177  Q
    ||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||    
T  9577556 ttcaaaatcattcaaatttagaaggattgtttaataaattggattttgatggattttgtgagattttctagtgaaattttagaatgaaaaaatctttcat 9577457  T
Q  178 gaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||| ||||||    
T  9577456 gaaaacatgagatttcttgggattg 9577432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 6312604 - 6312767
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  6312604 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 6312703  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  6312704 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 6312767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 29396558 - 29396395
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  29396558 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 29396459  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  29396458 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 29396395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 48524346 - 48524490
Alignment:
Q  29 tgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatg 128  Q
    ||||||||| |||||| ||||||||||||||       |||| ||| | ||||||||||||||||||| ||| |||||||||||||||||  ||||||||    
T  48524346 tgtggtatttaatcaaaactcttaatcacttaaaaaaagtcttgtgatattcaaaatcattcaaattttgaaagattgtttaataaatcagtttttgatg 48524445  T
Q  129 gattttgtgggattttctagtgaaattttagcatgaaaaagtctt 173  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  48524446 gattttgtgggattttctagtgaaattttaacatgaaaaagtctt 48524490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 51701610 - 51701770
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  51701610 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggat 51701709  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| ||||||| |||||||||    
T  51701710 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagattt 51701770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 48177597 - 48177469
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || ||||    
T  48177597 gtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaa 48177498  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  48177497 aagtctttcatgaaaagatgagatttctt 48177469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 9322630 - 9322507
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| ||||||||| ||||| ||||||| || |||||||||    
T  9322630 gtggtattcaaaatcattcaaatttagaaggattgtttaataaattgaattttgatggattttatgggattttgtagtgtaattttaacaagaaaaagtc 9322531  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||| ||||||||||||    
T  9322530 tttcatgaaaagatgagatttctt 9322507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 46328072 - 46328234
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| ||||||||||||||||||||||||||||||||||| |||   ||||||||||||    
T  46328072 ggtattcaatcaagacttttcatcacttacaaaaagtctcgtggtattcaaaatcattcaaatttcgaaggattgtttaattaattggattttgatggat 46328171  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttct 194  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| || |||| || ||||||||    
T  46328172 tttgtgggattttgtagtgtaattttaacaagaaaaagtctttcataaaaagataagatttct 46328234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 25612222 - 25612350
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||| ||||  ||||||| || ||||    
T  25612222 gtcttgtggtattcaaaatcattcaaatttcaaaggattgtttaataaattggattttgatggattttgtgggattttgtagtataattttaacaagaaa 25612321  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| ||||||| ||||||||||||    
T  25612322 aagtctttcatgaaaagatgagatttctt 25612350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 33025538 - 33025703
Alignment:
Q  28 ttgtggtattcaatcaaga-ctcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttga 126  Q
    ||||||||||||||||| | |||||||||||||       |||| ||||| ||||||||||||||||||| |||||||||||||||| ||||            
T  33025538 ttgtggtattcaatcaaaaactcttaatcacttaaaaaaagtcttgtggtattcaaaatcattcaaattttgaaggattgtttaatacatca-------- 33025629  T
Q  127 tggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
      ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  33025630 --gattttgtgggattttctaataaaattttagcatgaaaaagtctttcatgaaaacatgagatttcttatgattg 33025703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 15835183 - 15835060
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||   ||||||||||||||| ||||||||| ||||| ||||||| || |||||||||    
T  15835183 gtggtattcaaaatcattcaaattgcaaaggattgtttaataaattggattttgatggattttatgggattttgtagtgtaattttaacaagaaaaagtc 15835084  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||| ||||||||||||    
T  15835083 tttcatgaaaagatgagatttctt 15835060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 28387594 - 28387400
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||| ||||||||||||||||| || |||| ||        ||| ||||| |||||| ||||||||||||||||    
T  28387594 aagattctttgtcattttaaaaaagtcttgaggtattcaatcaagacttttcatcatttaaaaaaaatcttgtggtattcaaattcattcaaatttcgaa 28387495  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||||||   ||||||||||||||||||||||||| ||||  ||||||| ||  ||||||||||| || |||| ||||||||||||    
T  28387494 ggattgtttaataaattggattttgatggattttgtgggattttgtagtttaattttaacaaaaaaaagtctttcataaaaagatgagatttctt 28387400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 5495266 - 5495117
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||| ||||||| ||||||| ||||||||||          |||||    
T  5495266 ggtattcaatcaagacttttcatcacttaaaaaaagtctcgtggtattcaaaatcatttaaatttcaaaggattatttaataaat----------tggat 5495177  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatt 191  Q
    ||||||||||||| ||||| ||||||| || ||||||||| |||||||||| ||||||||    
T  5495176 tttgtgggattttgtagtgtaattttaacaagaaaaagtcctttatgaaaagatgagatt 5495117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 38536266 - 38536106
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    |||||| ||||||||||||||||| || || ||||       |||| ||||| |||||||| ||||||||||| ||||||||||||||||||   |||||    
T  38536266 gttttgaggtattcaatcaagacttttcattacttaacaaaagtcttgtggtattcaaaattattcaaatttcaaaggattgtttaataaattggatttt 38536167  T
Q  125 gatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||          ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  38536166 gatggattttg----------tagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 38536106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 38558484 - 38558324
Alignment:
Q  25 gttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaatttt 124  Q
    |||||| ||||||||||||||||| || || ||||       |||| ||||| |||||||| ||||||||||| ||||||||||||||||||   |||||    
T  38558484 gttttgaggtattcaatcaagacttttcattacttaacaaaagtcttgtggtattcaaaattattcaaatttcaaaggattgtttaataaattggatttt 38558385  T
Q  125 gatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||||||||||          ||||| ||||||| || |||||||||||| ||||||| ||||||||||||    
T  38558384 gatggattttg----------tagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttctt 38558324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 955826 - 955882
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggatttt 134  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  955826 ttcaaaatcattcaaatttcgaagggttgtttaataaatcagattttgatggatttt 955882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 48668905 - 48668785
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||          |||||||||||||||| | ||||| ||||||| || |||||||||    
T  48668905 gtggtattcaaaattattcaaatttcgaaagattgtttaataaat----------tggattttgtgggattctgtagtgtaattttaacaagaaaaagtc 48668816  T
Q  172 ttttatgaaaacatgagatttcttaggattg 202  Q
    ||| ||||||| ||||||||| || ||||||    
T  48668815 tttcatgaaaagatgagatttgttgggattg 48668785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 29219318 - 29219469
Alignment:
Q  34 tattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattt 133  Q
    ||||||||||||||| || |||||||       |||| ||||| ||||||||||||||||||  |||||||||||||||||||   ||||||||||||||    
T  29219318 tattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaattaagaaggattgtttaataaattggattttgatggattt 29219417  T
Q  134 tgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    |||          |||| ||||||| || |||||||| ||| ||||||| ||||||||||||    
T  29219418 tgt----------agtgtaattttaacaagaaaaagtatttcatgaaaagatgagatttctt 29219469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 18798521 - 18798605
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    ||||||||||||||||| || |||| ||       |||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  18798521 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaat 18798605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 49230916 - 49231000
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaat 116  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  49230916 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcgaaggattatttaataaat 49231000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 51085860 - 51085951
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaatttta 158  Q
    |||| ||||| |||||||| |||||||||| |||||||| || |||||||   ||||||||| ||||||||| ||||||| |||||||||||    
T  51085860 gtctcgtggtattcaaaataattcaaattttgaaggattattaaataaattggattttgatgaattttgtggaattttcttgtgaaatttta 51085951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 45272616 - 45272765
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||        ||| ||||| |||||||| ||| |||||||||||||| |||||||||||          |||||    
T  45272616 ggtattcaatcaagacttttcatcacttaaaaaaaatctcgtggtattcaaaattatttaaatttcgaaggat-gtttaataaat----------tggat 45272704  T
Q  132 tttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagattt 192  Q
    |||||| |||||| ||||| ||||||| || |||||| |||||||| |||| |||||||||    
T  45272705 tttgtgagattttgtagtgtaattttaacaagaaaaaatcttttataaaaagatgagattt 45272765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 47784413 - 47784542
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||  ||| ||       |||| ||||| |||||||| ||||||| ||| || |||||||||||||||          |    
T  47784413 ttgtggtattcaatcaagactctttgtca-tttaaaaaagtcttgtggtattcaaaattattcaaacttctaaagattgtttaataaat----------t 47784501  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaa 168  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  47784502 ggattttgtgagattttctagttaaattttagcatgaaaaa 47784542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 22183369 - 22183457
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcatt 89  Q
    |||||||||||||||||       || ||||||||||||||||||| ||||||||||||       |||||||||| ||||||||||||    
T  22183369 aagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagattcttaatcacttaaaaaaagtctagtggtattcaaaatcatt 22183457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 18798607 - 18798663
Alignment:
Q  138 ggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttct 194  Q
    ||||||| ||||| ||||||| || |||||||||||| ||||||| |||||||||||    
T  18798607 ggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttct 18798663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 31622583 - 31622544
Alignment:
Q  78 ttcaaaatcattcaaatttcgaaggattgtttaataaatc 117  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  31622583 ttcaaaatcattcaaatttcaaaagattgtttaataaatc 31622544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 38319996 - 38320098
Alignment:
Q  92 aatttcgaaggattgtttaataaatcaaattttgatggattttgt-gggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagat 190  Q
    ||||| ||| ||||||||| |||||   |||||||| |||||||| ||| |||| ||||||| ||||||||  ||||||||||| ||||||| |||| ||    
T  38319996 aattttgaatgattgtttactaaataggattttgatagattttgttgggtttttttagtgaa-ttttagcacaaaaaagtctttcatgaaaatatgatat 38320094  T
Q  191 ttct 194  Q
    ||||    
T  38320095 ttct 38320098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 953818 - 953876
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcactt 59  Q
    |||||||||||||||||       || ||||||||||| ||||||||||||||||||||    
T  953818 aagattctttgtcatttaaaaaaagtcttgtggtattcgatcaagactcttaatcactt 953876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 48524805 - 48524842
Alignment:
Q  165 aaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  48524805 aaaagtctttcatgaaaacatgagatttgttaggattg 48524842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 955876 - 955904
Alignment:
Q  138 ggattttctagtgaaattttagcatgaaa 166  Q
    |||||||||||||||||||||||||||||    
T  955876 ggattttctagtgaaattttagcatgaaa 955904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 102128 - 102302
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  102128 ttgtggtattcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaagattgtttaataaatcagattttgat 102227  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||    
T  102228 ggattttgtgggattttctagtgaaattttagcatgaaaaagtctttcataaaaatatgagatttcttatgattg 102302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 100217 - 100415
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || |||||||| |||||||||||||||||||||||       |||||||||| |||||||||||||||||||| ||    
T  100217 aagattctttgtcatttaaaaaaagtcttgtggtactcaatcaagactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcaaa 100316  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttagga 199  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  100317 ggattgtttaataaatcaaattttgatggattttgtgggtttttctagtgaaattttaacaagaaaaagtctttcatgaaaacatgagatttcttagga 100415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 39069 - 38895
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    |||||||||||||| |||||||||||||||||       |||||||| | ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  39069 ttgtggtattcaataaagactcttaatcacttaaaagaagtctagtgatattcaaaatcattcaaatttggaaggattgtttaataaatcagattttgat 38970  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||    
T  38969 ggattttgtgggattttctagtgaaattttggcatgaaaaagtctttcatgaaaacatgagattccttaggattg 38895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 740 - 540
Alignment:
Q  1 aagattctttgtcatttnnnnnnngttttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaa 100  Q
    |||||||||||||||||       || ||||||||||||||||| ||||||||||||||        | ||||||| ||||||||||||||||||| |||    
T  740 aagattctttgtcatttaaaaaaagtattgtggtattcaatcaaaactcttaatcacttaaattttttttagtggtattcaaaatcattcaaatttggaa 641  T
Q  101 ggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggat 200  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||    
T  640 ggattgtttaataaatcatattttgatggattttgtggaattttctagtgaaattttggtatgaaaaagtctttgacgaaaacatgagatttcttaggat 541  T
Q  201 t 201  Q
    |    
T  540 t 540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 10637 - 10760
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||| ||||| ||||||| || |||||||||    
T  10637 gtggtattcaaaatcattcaaatttcaaaggattgtttaataaattgaattttgatggattttatgggattttgtagtgtaattttaacaagaaaaagtc 10736  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||| ||||||||||||    
T  10737 tttcatgaaaagatgagatttctt 10760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 39747 - 39624
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || |||||||||    
T  39747 gtggtattcaaaatcattcaaacttcgaaggattatttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaaaagtc 39648  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||| || |||||||||    
T  39647 tttcatgaaaagataagatttctt 39624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 37081 - 36914
Alignment:
Q  28 ttgtggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgat 127  Q
    ||||| ||||||||||||||||||  ||| ||       |||| | ||| |||||||||||| ||||||||||| ||||||||||||||   ||||||||    
T  37081 ttgtgctattcaatcaagactctttgtcattttaaaaaagtcttgaggtattcaaaatcattaaaatttcgaagcattgtttaataaattggattttgat 36982  T
Q  128 ggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttctt 195  Q
    ||||||||||||||||| ||||| ||||||| || |||||||||||| ||||||| || |||||||||    
T  36981 ggattttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagataagatttctt 36914  T

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Target: scaffold1504 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 936 - 1063
Alignment:
Q  67 gtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaa 166  Q
    |||| ||||| |||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||| ||||| ||||||| |  ||||    
T  936 gtcttgtggtattcaaaatcattcaaatttcgaagaattatttaataaat-agattttgatggattttgtgggattttgtagtgtaattttaactagaaa 1034  T
Q  167 aagtcttttatgaaaacatgagatttctt 195  Q
    |||||||| || |||| ||||||||||||    
T  1035 aagtctttcattaaaatatgagatttctt 1063  T

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Target: scaffold0042 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 58206 - 58083
Alignment:
Q  72 gtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtc 171  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||| ||||  ||||||| || || ||| ||    
T  58206 gtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgatggattttgtgggattttgtagtataattttaacaagagaaaatc 58107  T
Q  172 ttttatgaaaacatgagatttctt 195  Q
    ||| ||||||| ||||||||||||    
T  58106 tttcatgaaaagatgagatttctt 58083  T

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Target: scaffold0347 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 14892 - 14967
Alignment:
Q  127 tggattttgtgggattttctagtgaaattttagcatgaaaaagtcttttatgaaaacatgagatttcttaggattg 202  Q
    |||||||||||||||||| ||||| ||||||| || |||||||||||| ||||||| ||||||||||||| |||||    
T  14892 tggattttgtgggattttgtagtgtaattttaacaagaaaaagtctttcatgaaaagatgagatttcttaagattg 14967  T

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Target: scaffold0306 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 13919 - 14023
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||| || |||||||||||||||   ||||||||||||    
T  13919 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcaaaagattgtttaataaattggattttgatggat 14018  T
Q  132 tttgt 136  Q
    |||||    
T  14019 tttgt 14023  T

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Target: scaffold0152 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 21408 - 21304
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||||||       |||| ||||| |||||||||||||||||||| || |||||||||||||||   ||||||||||||    
T  21408 ggtattcaatcaagacttttcatcacttaaaaaaagtcttgtggtattcaaaatcattcaaatttcaaaagattgtttaataaattggattttgatggat 21309  T
Q  132 tttgt 136  Q
    |||||    
T  21308 tttgt 21304  T

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Target: scaffold0922 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 4237 - 4337
Alignment:
Q  32 ggtattcaatcaagactcttaatcacttnnnnnnngtctagtggtgttcaaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggat 131  Q
    ||||||||||||||||| || |||| ||       |||| ||||| ||||||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  4237 ggtattcaatcaagacttttcatcatttaaaaaaagtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggat 4336  T
Q  132 t 132  Q
    |    
T  4337 t 4337  T

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Target: scaffold0007 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 199911 - 199998
Alignment:
Q  81 aaaatcattcaaatttcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaa 168  Q
    |||||||||||||||| ||| || ||||||||||||  ||||||||| ||||||||| |||||| |||||||| ||||| || |||||    
T  199911 aaaatcattcaaattttgaaagagtgtttaataaattgaattttgattgattttgtgagattttttagtgaaactttagtataaaaaa 199998  T

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Target: scaffold0839 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 3798 - 3720
Alignment:
Q  96 tcgaaggattgtttaataaatcaaattttgatggattttgtgggattttctagtgaaattttagcatgaaaaagtcttt 174  Q
    ||||| |||||||||||||||   ||||||||||||||||||||||||| ||||| ||||||| || ||||| ||||||    
T  3798 tcgaatgattgtttaataaattggattttgatggattttgtgggattttgtagtgtaattttaacaagaaaaggtcttt 3720  T

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