View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5476_low_2 (Length: 589)
Name: NF5476_low_2
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5476_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 13 - 573
Target Start/End: Complemental strand, 50087637 - 50087077
Alignment:
| Q |
13 |
gaagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087637 |
gaagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaa |
50087538 |
T |
|
| Q |
113 |
agttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087537 |
agttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaa |
50087438 |
T |
|
| Q |
213 |
caattactttttctaatcacactcattggtagaaaaatctttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaacatttttgta |
312 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087437 |
caattactttttctcatcacactcattggtagaaaaatatttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaacatttttgta |
50087338 |
T |
|
| Q |
313 |
tacatgctgggggtcgtgctgtgattgatgagttacaaaagaatcttcaattatctactgaacacgtggaagcatcaaggatgacactgcataggtttgg |
412 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087337 |
tacatgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaattatctactgaacacgtggaagcatcaaggatgacactgcataggtttgg |
50087238 |
T |
|
| Q |
413 |
taatacatcttcatcatcactatggtatgaacttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagt |
512 |
Q |
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| T |
50087237 |
taatacatcttcatcatcactatggtatgaacttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagt |
50087138 |
T |
|
| Q |
513 |
ggatttaaatgcaatagtgctgtttggaaatgtaacagaagcattaagacacctattgatg |
573 |
Q |
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| T |
50087137 |
ggatttaaatgcaatagtgctgtttggaaatgtaacagaagcattaagacacctattgatg |
50087077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 15239433 - 15239488
Alignment:
| Q |
267 |
aaaccatatatacctgattttaaacaagcttttgaacatttttgtatacatgctgg |
322 |
Q |
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| T |
15239433 |
aaaccatacattcctgattttaaattagcttttgagcatttttgtattcatgctgg |
15239488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 566
Target Start/End: Complemental strand, 23271897 - 23271345
Alignment:
| Q |
14 |
aagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaa |
113 |
Q |
| |
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|||||||||||| ||||| | || ||||||||||| || ||||||||||| |||||||| || || ||||| ||||||||||||| |||||||||| |
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| T |
23271897 |
aagagcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaaggtaaa |
23271798 |
T |
|
| Q |
114 |
gttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaac |
213 |
Q |
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|||||||| ||||||||||| ||||||||||| || ||||| |||||| | ||||||||||||||||| || |||||||||||| |||| |||||||||| |
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| T |
23271797 |
gttggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttcagaac |
23271698 |
T |
|
| Q |
214 |
aattactttttctaatcacactcattggtagaaaaatctttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaacatttttgtat |
313 |
Q |
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||||||| ||||| ||||||||||||| | |||||||| ||||||||| ||| || ||||| |||||||| |||||||| ||||| ||||||||||| |
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| T |
23271697 |
aattactctttcttttcacactcattggaaagaaaatcttcaaccctaaaatgaagccttatattcctgatttcaaacaagcgtttgagcatttttgtat |
23271598 |
T |
|
| Q |
314 |
acatgctgggggtcgtgctgtgattgatgagttacaaaagaatcttcaattatctactgaacacgtggaagcatcaaggatgacactgcataggtttggt |
413 |
Q |
| |
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|||||||| || ||||| ||||| ||||||||||| ||||||||||| ||||| ||||||| || || || ||||| ||||| |||||| | || || |
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| T |
23271597 |
tcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttcagctatctgctgaacatgttgaggcttcaagaatgacgctgcatcgattcggg |
23271498 |
T |
|
| Q |
414 |
aatacatcttcatcatcactatggtatgaacttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtg |
513 |
Q |
| |
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|| |||||||| ||||| ||||||||||| | ||||| |||||||||||||| |||||||||| ||| || || |||||||| ||||| ||||| |||| |
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| T |
23271497 |
aacacatcttcttcatctttatggtatgaattgaactatattgaatcaaaaggaaggatgaagagaggtgatagagtatggcaaatagcttttggaagtg |
23271398 |
T |
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| Q |
514 |
gatttaaatgcaatagtgctgtttggaaatgtaacagaagcattaagacacct |
566 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
23271397 |
gatttaaatgcaatagtgctgtgtggaaatgtaatagaagcattaaaacacct |
23271345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 33446775 - 33446615
Alignment:
| Q |
81 |
tgtgtttttgaagaagaagacaaagaaggtaaagttggaatatcacttc-aaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataaca |
179 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| ||| ||| | | ||||||||||||| | ||| |||||| | ||||||||||||| | |
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| T |
33446775 |
tgtgtttttgaggaagaagacaaagaagctaaagttggaatttcatttcgagagtaatcttatggcaatagtaggagaagcattgaaatcaaatataata |
33446676 |
T |
|
| Q |
180 |
acaatgggtcctcttgttttaccagcttcagaacaattactttttctaatcacactcattg |
240 |
Q |
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|| || || | ||||||| | || | |||| ||||||| || ||||| ||||||| |||| |
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| T |
33446675 |
actattggccatcttgttcttccggtttcaaaacaattgctctttcttttcacacttattg |
33446615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 49041372 - 49041276
Alignment:
| Q |
266 |
gaaaccatatatacctgattttaaacaagcttttgaacatttttgtatacatgctgggggtcgtgctgtgattgatgagttacaaaagaatcttcaa |
362 |
Q |
| |
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|||||| |||||||| ||||| ||| ||||||||||||||| ||||| |||||||| || | ||||| |||||||||| || |||||||||||| |
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| T |
49041372 |
gaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaa |
49041276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 26453321 - 26453392
Alignment:
| Q |
273 |
tatatacctgattttaaacaagcttttgaacatttttgtatacatgctgggggtcgtgctgtgattgatgag |
344 |
Q |
| |
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||||||||||||||||| | |||||||| ||||||||||| |||||||| ||| | ||||||||||||||| |
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| T |
26453321 |
tatatacctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgtgattgatgag |
26453392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 26453081 - 26453149
Alignment:
| Q |
33 |
gttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagac |
101 |
Q |
| |
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||||||||||| || || |||||||| | |||||||||||||| ||| ||||||| | ||||| ||||| |
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| T |
26453081 |
gttcatgttgtgaggactcataaaggtgctgatgataaagcatttaagtgtgtttatcaagaacaagac |
26453149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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