View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5476_low_3 (Length: 538)
Name: NF5476_low_3
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5476_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 300 - 522
Target Start/End: Complemental strand, 2747238 - 2747017
Alignment:
| Q |
300 |
cttcatatctctgaaacatccttcaattcaacactataatagctacctagtaccttgttctctaacacacagaca----cacttgttttgtttcttttgt |
395 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2747238 |
cttcatatctctcaaacatccttcaa-----cactataatagctacctagtaccctgttctctaacacacaaacatacacacttgttttgtttcttttgt |
2747144 |
T |
|
| Q |
396 |
taagttttatggcttaccaaaaccaacatctttcacaagagttaccaatccaacatttcacagaccaaaccaacaacaataacaacaactcattccgttc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2747143 |
taagttttatggcttaccaaaaccaacatctttcacaagagttaccaatccaacatttcacagaccaaaccaacaacaataataacaactcattccgttc |
2747044 |
T |
|
| Q |
496 |
catattaccagactcacccgaccctaa |
522 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2747043 |
catattaccagactcacccgaccctaa |
2747017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 2747534 - 2747486
Alignment:
| Q |
10 |
acatcatcacacatactttgtttggatttattttccgatcacaacaacg |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2747534 |
acatcatcacacatactttgtttggatttattttccgatcacagcaacg |
2747486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 2747354 - 2747314
Alignment:
| Q |
179 |
caccccctcaatattttatcttcatttcctagtcccacaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2747354 |
caccccctcaatattttatcttcatttcctagtcccacaat |
2747314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University