View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5476_low_4 (Length: 485)
Name: NF5476_low_4
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5476_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 30545200 - 30544720
Alignment:
| Q |
1 |
atcaagcaatttggagagattgaactataaaccttaaattgaaagaccaaactcttgatatgaatatgtcatcattttttgtgtgaaggaatatgaatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| |
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| T |
30545200 |
atcaagcaatttggagagattgaactataaaccttaaattgaaagaccaaactctagatatgaatatgtcatcatttttttttggaaggaatatgaatat |
30545101 |
T |
|
| Q |
101 |
gtcatcatgaattgtttacactataatataatatannnnnnnn---------caatgatctgttttgaataaaatatagttggttgcctcccttatacac |
191 |
Q |
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| T |
30545100 |
gtcatcatgaattgtttacactataatataatatatatatatatatatttttcaatgatctgttttgaataaaatatagttggttgcctcccttatacac |
30545001 |
T |
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| Q |
192 |
caaaaatagaagttggttatgtaacttttttctgacgcggtagctggaagttgaagataggtatcacaatattgaaacnnnnnnnattgctaagtcaaat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30545000 |
caaaaatagaagttggttatgtaacttttttctgacgcggtagctggaagttgaagataggtatcacaatattgaaactttttttattgctaagtcaaat |
30544901 |
T |
|
| Q |
292 |
tattaggcttagctgtaattaggatttaggagaatggtaaattgatcagattagatgtgttatatggtaaagaatattcggatcatatacaaagtgcata |
391 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30544900 |
tattaggcttagctgtaattaggatttaggaaaatggtaaattgatcagattagatgtgttatatggtaaagaatattcggatcatatacaaagtgcata |
30544801 |
T |
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| Q |
392 |
aattaaagtttgtctaggaagctttatttattttattttgggggtacagaagcaaagaacaatgacacaaactacatattg |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30544800 |
aattaaagtttgtctaggaagctttatttattttattttgggggtacagaagcaaagaacaatgacacaaactacatattg |
30544720 |
T |
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