View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5476_low_8 (Length: 336)

Name: NF5476_low_8
Description: NF5476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5476_low_8
NF5476_low_8
[»] chr5 (2 HSPs)
chr5 (1-326)||(33814557-33814882)
chr5 (189-326)||(33809826-33809964)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-326)||(657-982)
[»] chr4 (1 HSPs)
chr4 (1-318)||(9754277-9754594)
[»] chr3 (3 HSPs)
chr3 (1-326)||(54969165-54969490)
chr3 (31-326)||(4283981-4284273)
chr3 (1-59)||(13563709-13563767)
[»] chr7 (2 HSPs)
chr7 (121-326)||(4837499-4837704)
chr7 (1-92)||(4837703-4837794)
[»] chr6 (1 HSPs)
chr6 (184-320)||(1130083-1130219)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 33814557 - 33814882
Alignment:
Q  1 catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg 100  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33814557 catcaaaaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatg 33814656  T
Q  101 gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33814657 gttacaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg 33814756  T
Q  201 gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33814757 gtgttcaaactcaagtctgaagagaacaacccaaaccccaagtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag 33814856  T
Q  301 aaatattctcaccggtggtgatgatg 326  Q
    ||||||||||||||||||||| ||||    
T  33814857 aaatattctcaccggtggtgaagatg 33814882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 189 - 326
Target Start/End: Original strand, 33809826 - 33809964
Alignment:
Q  189 aaaaataaatgggtgttcaaact-caagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtg-ccatcaaaagaaagg 286  Q
    |||||||||||||| |||||||| ||| | | ||| || |||||||| ||||| |||||||||| |||||| |||||||||||| || ||||||||||||    
T  33809826 aaaaataaatgggttttcaaacttcaattttaaaggga-caacccaacccccaagtacaaagcatgaattggtgtgaaggggtgcccttcaaaagaaagg 33809924  T
Q  287 cattgattttgaagaaatattctcaccggtggtgatgatg 326  Q
    ||||||||||||| |||| || || |||||||||| ||||    
T  33809925 cattgattttgaaaaaatgttttccccggtggtgaagatg 33809964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 657 - 982
Alignment:
Q  1 catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg 100  Q
    ||||||||||||| |||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  657 catcaagaagatacttctcaggtgaatatgtaaacttcacaaaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg 756  T
Q  101 gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  757 gttgcaatccatggaagaagagatgcaatccctaaaggagaatgaaacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg 856  T
Q  201 gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag 300  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  857 gtgttcaaactcaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag 956  T
Q  301 aaatattctcaccggtggtgatgatg 326  Q
    ||||||||||||||||||||| ||||    
T  957 aaatattctcaccggtggtgaagatg 982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 9754594 - 9754277
Alignment:
Q  1 catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg 100  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  9754594 catcaagaagatacttctcaggtgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg 9754495  T
Q  101 gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg 200  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  9754494 gttgtaatccatggaagaagagatgcaatccctaaaggagaatgagacgtatgacctggtaaaattgccaaatggaaagagggcattgaaaaataaatgg 9754395  T
Q  201 gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag 300  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  9754394 gtgttcaaacttaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag 9754295  T
Q  301 aaatattctcaccggtgg 318  Q
    ||||||||||| ||||||    
T  9754294 aaatattctcatcggtgg 9754277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 54969490 - 54969165
Alignment:
Q  1 catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg 100  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  54969490 catcaagaagatacttctcaggtgaatatgtaaacttcaccgaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg 54969391  T
Q  101 gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  54969390 gttgcaatccatggaagaagagatgcaatccctaaaggagaatgacacgtatgacctggtcaaattaccagatggaaagagggcattgaaaaataaatgg 54969291  T
Q  201 gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag 300  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||| | ||||||||||||    
T  54969290 gtgtttaaactcaagtctgaagagaacaacccaaatcccagatacaaggcacgaatagtcgtgaaggggtgccatcaaaagaaagacgttgattttgaag 54969191  T
Q  301 aaatattctcaccggtggtgatgatg 326  Q
    ||||||||||||||||||||| ||||    
T  54969190 aaatattctcaccggtggtgaagatg 54969165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 31 - 326
Target Start/End: Complemental strand, 4284273 - 4283981
Alignment:
Q  31 taaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatggttgcaatccatggaagaagagatgaaatc 130  Q
    ||||||| ||| | ||| |||||||||||||| |||||||||| ||||||| |||||||||| |||||||| |||||| |||  ||||||| |||  |||    
T  4284273 taaattttactaatgaaagggaacctcaaagcatcatggaagccatagagacaaccaataagcaaaaatggctgcaatgcattcaagaagaaatgccatc 4284174  T
Q  131 cctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaac 230  Q
    ||||||||||||  | || |||||| ||||||||||||   ||||||| |||||||||||||||||| |||||||||| |||| ||||||| ||||||||    
T  4284173 cctaaaggagaaccaaacatatgacttggtaaaattactgaatggaaatagggcattgaaaaataaacgggtgttcaagctcatgtctgaatagaacaac 4284074  T
Q  231 ccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccggtggtgatgatg 326  Q
     ||||||| |||||||||||||||   || |||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||    
T  4284073 tcaaaccctaggtacaaagcacga---gtcgtgaaggaatgccatcaaaagaaaggcattgattttgaagaaaaattctcaccagtgatgaagatg 4283981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13563767 - 13563709
Alignment:
Q  1 catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaa 59  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||    
T  13563767 catcaagaagatacttctcaggtgaatatgtaaacttcactaaggaaggcgaacctcaa 13563709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 121 - 326
Target Start/End: Complemental strand, 4837704 - 4837499
Alignment:
Q  121 agatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctga 220  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||    
T  4837704 agatgcaatccctaaaggagaatgagacgtatgatctggtaaaattaccagatggaaagagggcgttgaaaaacaagtgggtgttcaaactcaagtctga 4837605  T
Q  221 agagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccggtggtg 320  Q
    ||||||||||||||| ||||  |||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  4837604 agagaacaacccaaatcccatatacaaagcacaaatagtcgtgaaggggtgccatcgaaagaaaggcattgattttgaagaaatattctcaccagtggtg 4837505  T
Q  321 atgatg 326  Q
    | ||||    
T  4837504 aggatg 4837499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 4837794 - 4837703
Alignment:
Q  1 catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataag 92  Q
    |||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  4837794 catcaaaaagatacttctcagttgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataag 4837703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 320
Target Start/End: Complemental strand, 1130219 - 1130083
Alignment:
Q  184 cattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaa 283  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    |||||| ||||||||||||||||||| |  |||||| |||||||||| ||    
T  1130219 cattgaaaaataattggatgttcaaactcaagtctgaagagaacaagttgaaccccgggtacaaagcacgaattgtcgctaaggggcgccatcaaaataa 1130120  T
Q  284 aggcattgattttgaagaaatattctcaccggtggtg 320  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  1130119 aggcaatgattttgaagaaatattctcatcggtggtg 1130083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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