View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5477-Insertion-4 (Length: 556)

Name: NF5477-Insertion-4
Description: NF5477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5477-Insertion-4
NF5477-Insertion-4
[»] chr7 (1 HSPs)
chr7 (8-556)||(36324146-36324685)


Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Complemental strand, 36324685 - 36324146
Alignment:
Q  8 tgttcccccatttgtttcattacaaataattctttctctcacagcccaaccacatgaattcaagttcatatatcatcacattgtatcaactttttattct 107  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  36324685 tgttcccccttttttttcattacaaataattctttctctgacagcccaaccacatgaattcaagttcatatatcatcacattgtatcaactttttatt-- 36324588  T
Q  108 tctttttgtcacaaacatttttccttgttttaagggactccttaattcccaccctcttcatgcataatacattggtacattttttccttaaattttaaca 207  Q
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36324587 -------gtcacaaacatttttccttgttttaagggactcattaattcccaccctcttcatgcataatacattggtacattttttccttaaattttaaca 36324495  T
Q  208 ttaatatatatgtcaatattaacctcattgtaaactgcatttttattattattctttagaggatcaaattctagtgctgcatttccccattacattcaga 307  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36324494 ttagcatatatgtcaatattaacctcattgtaaactgcatttttattattattctttagaggatcaaattctagtgctgcatttccacattacattcaga 36324395  T
Q  308 ttttgctatctggagggtggtaattcaatttgaagcctgcctatttgatgttttggcctttctttcccttcttcacgttcagtgtcggatttttctgatt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36324394 ttttgctatctggagggtggtaattcaatttgaagcctgcctatttgatgttttggcctttctttcccttcttcacgttcagtgtcggatttttctgatt 36324295  T
Q  408 ggtgcatgcaagaagggaaagagagaagaatttcaagccagattttttgaatttcctcaaaactaatcaattggttgatgttgcttgaatttgaaaatga 507  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36324294 gatccatgcaagaagggaaagagagaagaatttcaagccagattttttgaatttcctcaaaactaatcaattggttgatgttgcttgaatttgaaaatga 36324195  T
Q  508 ctacggtatctggtgttgtttcccgccaagtactgcctgcttgtggttc 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36324194 ctacggtatctggtgttgtttcccgccaagtactgcctgcttgtggttc 36324146  T

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