View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5477-Insertion-5 (Length: 526)
Name: NF5477-Insertion-5
Description: NF5477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5477-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 40328797 - 40328600
Alignment:
| Q |
8 |
taaaaaaccctaacaaaaaagtttgaaaggaaacataagcgcttacgtggtggaagggctgatgtattcatgcatctttccagaagcaccaaagagaata |
107 |
Q |
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| T |
40328797 |
taaaaaaccctaacaaaaaagtttgaaaggaaacataagcgcttacgtggtagaagggctgatgtattcatgcatctttccagaagcaccaaagagaata |
40328698 |
T |
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| Q |
108 |
agggaaacttgagcatcacaaagaacacttatttcctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagtt |
205 |
Q |
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| T |
40328697 |
agggaaacttgagcatcacaaagaacacttatttcctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagtt |
40328600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 293 - 526
Target Start/End: Complemental strand, 40328512 - 40328281
Alignment:
| Q |
293 |
aaacaatgtttgagtatagagcatagagggtatattgtaggaagaaagaaaagtaatagatgaccattctattttaggtttgtggatgtgtaactttctg |
392 |
Q |
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| T |
40328512 |
aaacaatgtttgagtatagagcatagagggtatattatagaaagaaagaaaagtaatagatgaccattctattttaggtttgtggatgtgtaactttctg |
40328413 |
T |
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| Q |
393 |
agtggcactggaaggaagtgtttgtttaagggattgtgacaaagccaattcaatactagtgccnnnnnnnnnnnnattacgtttgattaattacttttga |
492 |
Q |
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| T |
40328412 |
agtggcacaggaaggaagtgtttgtttaagggattgtgacaaagccaattcaatactagtgc--tttttttttttattacgtttgattaattacttttga |
40328315 |
T |
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| Q |
493 |
tttcaagctgttgtgtgttgttccatcttcttaa |
526 |
Q |
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| T |
40328314 |
tttcaagctgttgtgtgttgttccattttcttaa |
40328281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 10225378 - 10225533
Alignment:
| Q |
50 |
ttacgtggtggaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttatttcctttgct |
149 |
Q |
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||||||||| |||||||| |||||||||||||| |||||||||| | ||| || ||| |||||||||||||||||| |||||| | ||||| || ||| |
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| T |
10225378 |
ttacgtggtagaagggctaatgtattcatgcatttttccagaaggagcaatgatgatagtggaaacttgagcatcacatagaacattgatttctttagct |
10225477 |
T |
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| Q |
150 |
ttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagtt |
205 |
Q |
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| T |
10225478 |
ttctttaaaatcccgctttttctctttgaatatgtaacttgtctattgcttgagtt |
10225533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 8201190 - 8201113
Alignment:
| Q |
119 |
agcatcacaaagaacacttatttcctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgtt |
196 |
Q |
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|||||||||||||||||| | ||| | ||||||||| | || |||||| |||||||||| || || ||||||||||| |
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| T |
8201190 |
agcatcacaaagaacactaagttcatgtgctttcttgaatataccattccttctctttgagtatgtcacttgcctgtt |
8201113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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