View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5477-Insertion-6 (Length: 500)
Name: NF5477-Insertion-6
Description: NF5477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5477-Insertion-6 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 116 - 500
Target Start/End: Complemental strand, 26019217 - 26018833
Alignment:
| Q |
116 |
caagagtgaaaccatggattacattattagtttagtagcccttgcatatgcattcgtcccgatacacatgactagcaatggaagttgtccataagcttac |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019217 |
caagagcgaaaccatggattacattattagtttagtagcccttgcatatgcattcgtcccgatacacatgactagcaatggaagttgtccataagcttac |
26019118 |
T |
|
| Q |
216 |
agttaacaggaagttccatggcttggttaggatcaataccatagaaagaaagcaatcctgaatccttataacgacataggcattgaagatcggctttggc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019117 |
agttaacaggaagttccatggcttggttaggatcaataccatagaaagaaagcaatcctgaatccttataacgacataggcattgaagatcggctttggc |
26019018 |
T |
|
| Q |
316 |
aatagccgagcagcaaacatcagatggcttttgaccattaactgaattgtcgccactaacatacggcgcgcatgccttcagtccttgttttgtcatgtga |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019017 |
aatagccgagcagcaaacatcagatggcttttgaccattaactgaattgtcaccactaacatacggcgcgcatgccttcagtccttgttttgtcatgtga |
26018918 |
T |
|
| Q |
416 |
cataacgactgaccattaaccaacaacatggtattggcaatgatcaacaatatgcccacaatcataaccttgttgtatgcctcca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26018917 |
cataacgactgaccattaaccaacaacatggtattggcaatgatcaacaatatgcccacaatcataaccttgttgtatgcctcca |
26018833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 202 - 500
Target Start/End: Complemental strand, 26003271 - 26002973
Alignment:
| Q |
202 |
gtccataagcttacagttaacaggaagttccatggcttggttaggatcaataccatagaaagaaagcaatcctgaatccttataacgacataggcattga |
301 |
Q |
| |
|
||||| ||||||||| ||||| || || ||||||||||| | |||||||||||||||||||||||||| ||||||||||| |||| ||| || |||| | |
|
|
| T |
26003271 |
gtccacaagcttacacttaactgggagatccatggcttgatctggatcaataccatagaaagaaagcaaccctgaatccttgtaactacaaagacattca |
26003172 |
T |
|
| Q |
302 |
agatcggctttggcaatagccgagcagcaaacatcagatggcttttgaccattaactgaattgtcgccactaacatacggcgcgcatgccttcagtcctt |
401 |
Q |
| |
|
||||| || |||||| |||| ||||||| ||||| ||| ||||| | | | ||| | ||||| ||||| ||| | |||||||||||||||| |
|
|
| T |
26003171 |
agatcagccttggcagtagcatggcagcaagcatcacttggaatttgaaaagcagcaattttgacaccactcacatatggctcacatgccttcagtcctt |
26003072 |
T |
|
| Q |
402 |
gttttgtcatgtgacataacgactgaccattaaccaacaacatggtattggcaatgatcaacaatatgcccacaatcataaccttgttgtatgcctcca |
500 |
Q |
| |
|
|||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
26003071 |
tgtttgtcatctgacataatgactgaccatcaatcaacaacatggtattggcaatgatcaacaatatccccacaatcataatcttcttgtatgcctcca |
26002973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 26019324 - 26019244
Alignment:
| Q |
8 |
gaactgagactaagaactaagagatccagggttcaaagttcagctagtaacacaacatactaacaattaacatttgcttac |
88 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019324 |
gaactgagactaagaacgaagagatccagggttcaaagttcagctagtaacacaacatactaacaattaacatttgcttac |
26019244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University