View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5477_high_10 (Length: 273)

Name: NF5477_high_10
Description: NF5477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5477_high_10
NF5477_high_10
[»] chr5 (1 HSPs)
chr5 (16-254)||(8830618-8830856)
[»] chr1 (5 HSPs)
chr1 (22-96)||(44002825-44002899)
chr1 (16-89)||(43910199-43910272)
chr1 (22-96)||(43984817-43984891)
chr1 (22-92)||(43918835-43918904)
chr1 (22-211)||(43989091-43989274)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 8830618 - 8830856
Alignment:
Q  16 aatatggtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaactagccaactcaaagcaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8830618 aatatggtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaactagccaactcaaagcaca 8830717  T
Q  116 aaaacagtgaataaatacaaatcaagtaacaaaaatagcatatctagaaatcctaaagcaacaaacttgccaaatcaagaaaaaacaaacaacaaattat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8830718 aaaacagtgaataaatacaaatcaagtaacaaaaatagcatatcttgaaatcctaaagcaaaaaacttgccaaatcaagaaaaaacaaacaacaaattat 8830817  T
Q  216 gaaggagaatgtgtgtgaaagagcagaagcagcatagaa 254  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8830818 gaaggagaatgtgtgtgaaagagcagaagcagcatagaa 8830856  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 44002825 - 44002899
Alignment:
Q  22 gtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaa 96  Q
    |||||||||||| ||||||| || || ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  44002825 gtaagcaaaacagtaagtcactgactagatttgttcaagcaaaacagtgaagaaatagccaaatcaagcaacaaa 44002899  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 43910272 - 43910199
Alignment:
Q  16 aatatggtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaag 89  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||    
T  43910272 aatatagtaagaaaaacaataagtcggtggcttgatttgttcaaactaaacagtgaagaaatagcaaaatcaag 43910199  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 43984817 - 43984891
Alignment:
Q  22 gtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaa 96  Q
    |||||||||||| ||||||  || |  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  43984817 gtaagcaaaacagtaagtcgttgacaagatttgttcaaacaaaacagtgaagaaatagccaaatcaagcaacaaa 43984891  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 43918904 - 43918835
Alignment:
Q  22 gtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaa 92  Q
    ||||||||||||  ||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||    
T  43918904 gtaagcaaaacag-aagtcagtggcttcatttgtttaaacaaaagagtgaagaaatagccaaatcaagcaa 43918835  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 43989091 - 43989274
Alignment:
Q  22 gtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaactagccaactcaaagcacaaaaaca 121  Q
    ||||||||| || ||  |||||||||  ||||||| | |||||| |||||||||||||||||||||| ||||||||||||||| ||||  ||| |||| |    
T  43989091 gtaagcaaagcagtagatcagtggctacatttgttaa-acaaaagagtgaagaaatagccaaatcaa-caacaaactagccaaatcaagacac-aaaata 43989187  T
Q  122 gtgaataaatacaaatcaagtaacaaaa-atagcatatctagaaatcctaaagcaacaaacttgccaaatcaagaaaaaacaaacaacaaa 211  Q
    ||||  ||| ||||| |||| ||||||| |||| | || |    ||  | ||||||||||||||| || ||||||||||| ||||||||||    
T  43989188 gtgagcaaagacaaaacaagaaacaaaatataggagattt----atattgaagcaacaaacttgcgaattcaagaaaaaataaacaacaaa 43989274  T

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