View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5477_high_9 (Length: 275)

Name: NF5477_high_9
Description: NF5477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5477_high_9
NF5477_high_9
[»] chr3 (1 HSPs)
chr3 (48-254)||(31590457-31590660)
[»] chr1 (1 HSPs)
chr1 (178-211)||(5243304-5243337)
[»] chr8 (1 HSPs)
chr8 (90-134)||(35871177-35871221)
[»] chr5 (2 HSPs)
chr5 (178-210)||(35053683-35053715)
chr5 (178-210)||(35070000-35070032)
[»] chr4 (1 HSPs)
chr4 (90-134)||(24445378-24445422)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 48 - 254
Target Start/End: Complemental strand, 31590660 - 31590457
Alignment:
Q  48 gcacacactgacacagacaagttgacactagtnnnnnnntttaaaaataaattaattgaacgtaatcacatgttttggcatcatgtctacgtgtcagaca 147  Q
    ||||||| |||||| ||||||||||||| |||       |||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||    
T  31590660 gcacacaatgacacggacaagttgacaccagtaaaaaaatttaaaaataaattaattgaacttaatcacatgtttcagcatcatgtctacgtgtcagaca 31590561  T
Q  148 cctttttgtttttaagctgacacaccttatacaccttcaatcagaagtgtcagtgctacatagcagcagtagcacataactaaatacacaaaaatcatag 247  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||    
T  31590560 cctttttctttttaagctgacacaccttacacaccttcaatcagaagtgtcagtgctacata---gcagtagcacataactgaatacacaaaaatcatag 31590464  T
Q  248 taatcca 254  Q
    |||||||    
T  31590463 taatcca 31590457  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 5243304 - 5243337
Alignment:
Q  178 acaccttcaatcagaagtgtcagtgctacatagc 211  Q
    ||||||||||||||||||||| ||||||||||||    
T  5243304 acaccttcaatcagaagtgtcggtgctacatagc 5243337  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 35871221 - 35871177
Alignment:
Q  90 aaaaataaattaattgaacgtaatcacatgttttggcatcatgtc 134  Q
    ||||||||| |||||||| |||||||||||| |||| ||||||||    
T  35871221 aaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtc 35871177  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 35053715 - 35053683
Alignment:
Q  178 acaccttcaatcagaagtgtcagtgctacatag 210  Q
    ||||||||||||||||||||| |||||||||||    
T  35053715 acaccttcaatcagaagtgtcggtgctacatag 35053683  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 35070032 - 35070000
Alignment:
Q  178 acaccttcaatcagaagtgtcagtgctacatag 210  Q
    ||||||||||||||||||||| |||||||||||    
T  35070032 acaccttcaatcagaagtgtcggtgctacatag 35070000  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 24445422 - 24445378
Alignment:
Q  90 aaaaataaattaattgaacgtaatcacatgttttggcatcatgtc 134  Q
    ||||||||| |||||||| |||||||||||| |||| ||||||||    
T  24445422 aaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtc 24445378  T

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